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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27045 Canola nucleus 80.75 81.69
Bra022612.1-P Field mustard nucleus 80.46 81.4
CDX96157 Canola nucleus 81.03 81.03
KRG91594 Soybean nucleus 38.51 41.74
KRH35230 Soybean nucleus 35.34 41.41
VIT_16s0050g01480.t01 Wine grape mitochondrion 21.26 40.66
AT4G01250.1 Thale cress nucleus 32.47 37.92
KRH08822 Soybean nucleus, plastid 27.87 37.74
KRH38335 Soybean nucleus 37.93 35.48
Zm00001d037054_P001 Maize nucleus 23.28 32.27
KRH08826 Soybean nucleus 36.78 31.37
AT4G23550.1 Thale cress nucleus 27.3 30.65
Zm00001d053369_P001 Maize nucleus 32.18 30.35
Os02t0265200-01 Rice nucleus 31.32 30.19
EES04883 Sorghum nucleus 31.9 29.6
Zm00001d016052_P001 Maize nucleus 32.47 29.5
Zm00001d008578_P001 Maize nucleus 27.01 27.57
EER89819 Sorghum nucleus 26.15 26.0
AT1G29280.1 Thale cress nucleus 18.97 25.48
TraesCS7B01G240000.1 Wheat nucleus 25.57 25.14
TraesCS7D01G336400.1 Wheat nucleus 25.29 24.72
TraesCS7A01G343000.2 Wheat nucleus 25.29 24.72
AT3G58710.1 Thale cress nucleus 18.39 23.53
Os06t0504900-00 Rice nucleus 25.29 22.8
HORVU7Hr1G080950.1 Barley nucleus, plastid 25.57 21.87
AT1G30650.1 Thale cress nucleus 25.29 20.47
AT2G34830.2 Thale cress nucleus 25.0 19.95
AT4G31550.1 Thale cress nucleus 18.39 19.69
AT2G24570.1 Thale cress nucleus 17.82 19.31
AT5G28650.1 Thale cress nucleus 16.67 17.58
AT4G24240.1 Thale cress nucleus 17.24 17.0
AT3G04670.1 Thale cress nucleus 16.09 16.97
AT2G23320.1 Thale cress nucleus 14.94 16.4
AT2G30590.1 Thale cress nucleus 16.67 15.26
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80EntrezGene:835360EMBL:AB493790ProteinID:AED96266.1EMBL:AF418310
EMBL:AK230436ArrayExpress:AT5G52830EnsemblPlantsGene:AT5G52830RefSeq:AT5G52830TAIR:AT5G52830RefSeq:AT5G52830-TAIR-G
EnsemblPlants:AT5G52830.1TAIR:AT5G52830.1ProteinID:BAB10431.1EMBL:BT026451ncoils:CoilGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007263GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009605GO:GO:0009607GO:GO:0009719GO:GO:0009739GO:GO:0009987
GO:GO:0042742GO:GO:0043565GO:GO:0044212GO:GO:0045892InterPro:IPR003657InterPro:IPR036576
RefSeq:NP_568777.1PFAM:PF03106PO:PO:0000036PO:PO:0000039PO:PO:0000293PO:PO:0001017
PO:PO:0001054PO:PO:0001185PO:PO:0003011PO:PO:0005417PO:PO:0006502PO:PO:0007115
PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0009066PO:PO:0020030PO:PO:0020100PO:PO:0025022PO:PO:0025166
PO:PO:0025181PO:PO:0025195PO:PO:0025281PFscan:PS50811PANTHER:PTHR32096PANTHER:PTHR32096:SF22
UniProt:Q0WKX3UniProt:Q9FLX8SMART:SM00774SUPFAM:SSF118290UniParc:UPI00000AC9ADSymbol:WRKY27
InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:::
Description
WRKY27Probable WRKY transcription factor 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX8]
Coordinates
chr5:+:21410769..21412526
Molecular Weight (calculated)
38723.5 Da
IEP (calculated)
4.473
GRAVY (calculated)
-0.927
Length
348 amino acids
Sequence
(BLAST)
001: MSSEDWDLFA VVRSCSSSVS TTNSCAGHED DIGNCKQQQD PPPPPLFQAS SSCNELQDSC KPFLPVTTTT TTTWSPPPLL PPPKASSPSP NILLKQEQVL
101: LESQDQKPPL SVRVFPPSTS SSVFVFRGQR DQLLQQQSQP PLRSRKRKNQ QKRTICHVTQ ENLSSDLWAW RKYGQKPIKG SPYPRNYYRC SSSKGCLARK
201: QVERSNLDPN IFIVTYTGEH THPRPTHRNS LAGSTRNKSQ PVNPVPKPDT SPLSDTVKEE IHLSPTTPLK GNDDVQETNG DEDMVGQEVN MEEEEEEEEV
301: EEDDEEEEDD DDVDDLLIPN LAVRDRDDLF FAGSFPSWSA GSAGDGGG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.