CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08822	Soybean	nucleus, plastid	55.88	88.72
KRH38335	Soybean	nucleus	75.0	82.26
KRH35230	Soybean	nucleus	38.97	53.54
KRG91594	Soybean	nucleus	41.67	52.96
VIT_16s0050g01480.t01	Wine grape	mitochondrion	16.91	37.91
AT5G52830.1	Thale cress	nucleus	31.37	36.78
Bra022612.1-P	Field mustard	nucleus	30.64	36.34
CDY27045	Canola	nucleus	30.64	36.34
CDX96157	Canola	nucleus	30.39	35.63
KRH27887	Soybean	nucleus	18.63	35.51
KRH06582	Soybean	nucleus	27.7	33.73
KRH59972	Soybean	nucleus	23.04	32.64
KRH41244	Soybean	nucleus	23.04	32.19
KRH77587	Soybean	nucleus	19.12	31.84
KRH40377	Soybean	nucleus	26.72	31.32
KRH00856	Soybean	nucleus	26.72	31.05
Zm00001d037054_P001	Maize	nucleus	18.63	30.28
Os02t0265200-01	Rice	nucleus	26.47	29.92
Zm00001d053369_P001	Maize	nucleus	26.72	29.54
EES04883	Sorghum	nucleus	26.96	29.33
Zm00001d016052_P001	Maize	nucleus	26.72	28.46
Zm00001d008578_P001	Maize	nucleus	23.04	27.57
TraesCS7B01G240000.1	Wheat	nucleus	21.32	24.58
TraesCS7D01G336400.1	Wheat	nucleus	21.08	24.16
EER89819	Sorghum	nucleus	20.59	24.0
TraesCS7A01G343000.2	Wheat	nucleus	20.83	23.88
KRH27073	Soybean	nucleus	15.2	23.57
KRH22261	Soybean	nucleus	15.2	23.4
KRH59007	Soybean	nucleus	14.46	23.14
KRH42896	Soybean	nucleus	14.46	22.61
KRH68270	Soybean	nucleus	13.24	21.34
Os06t0504900-00	Rice	nucleus	20.1	21.24
KRH61946	Soybean	nucleus, plastid	14.22	20.79
HORVU7Hr1G080950.1	Barley	nucleus, plastid	20.59	20.64
KRH28430	Soybean	nucleus	16.18	20.56
KRH42254	Soybean	nucleus	21.57	20.51
KRH77042	Soybean	nucleus	15.93	20.25
KRH58373	Soybean	nucleus	21.32	20.23
KRH52606	Soybean	nucleus	14.71	20.0
KRH04545	Soybean	nucleus	16.18	19.88
KRH57965	Soybean	nucleus	15.93	19.46
KRH04945	Soybean	nucleus	14.95	19.3
KRH16144	Soybean	nucleus	14.95	19.3
KRH19120	Soybean	nucleus	15.2	19.14
KRH12362	Soybean	nucleus	13.73	19.11
KRH36880	Soybean	nucleus	24.02	19.07
KRH37367	Soybean	nucleus	13.73	18.92
KRH02746	Soybean	nucleus	14.71	18.75
KRH11863	Soybean	nucleus	24.02	18.74
KRG96534	Soybean	nucleus	12.99	18.66
KRH67313	Soybean	nucleus	14.95	17.89
KRH71315	Soybean	nucleus	14.46	16.62
KRH32116	Soybean	extracellular	14.71	15.31
KRH05637	Soybean	nucleus	8.58	12.59
KRH15403	Soybean	cytosol, nucleus, plastid	6.13	9.06

Protein Annotations

EntrezGene:100796829	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02010211	EnsemblPlantsGene:GLYMA_16G177000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:K7MHZ9	EnsemblPlants:KRH08826	ProteinID:KRH08826	ProteinID:KRH08826.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR32096	PANTHER:PTHR32096:SF22	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000233E4D7	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:33837701..33839617

Molecular Weight (calculated)

44497.4 Da

IEP (calculated)

6.228

GRAVY (calculated)

-0.764

Length

408 amino acids

Sequence
(BLAST)

001: MTHEDWDLFA IVRSCKAATF TATTNTETPP TPAPNTTSCL DLSQENGSFS FPNLVQPTTN GFQELQHQQL VINFNPTNTT STTSSTSTIT SGLGINPNST
101: FSEVAGFIGQ QQGYHHHLLP APTNHTSIGT PTTTGFDRFQ HHQQQQLQSP EQNQPPLQAP QTSPILSPTT QPQTPRSRKR KSHQKKMVCH VTADNLSSDL
201: WAWRKYGQKP IKGSPYPRNY YRCSSCKGCV ARKQVERSTT EPNTFIVTYT GDHKHAKPVQ RNSLAGSTRT KPSTTRLSEP NESVTCPKRE NACSSNSELS
301: PMLSVSDTPK NEETVSAGEP DCPDMEIEPS ENDDDDVLIP NTGAMSDAVL LGLTNVDRDG VSTLGIDQKN TSGSCQSYPE PDPFSKPGLY SSALGPAKLA
401: DLLDDCNL

Best Arabidopsis Sequence Match ( AT5G52830.1 )
(BLAST)

001: MSSEDWDLFA VVRSCSSSVS TTNSCAGHED DIGNCKQQQD PPPPPLFQAS SSCNELQDSC KPFLPVTTTT TTTWSPPPLL PPPKASSPSP NILLKQEQVL
101: LESQDQKPPL SVRVFPPSTS SSVFVFRGQR DQLLQQQSQP PLRSRKRKNQ QKRTICHVTQ ENLSSDLWAW RKYGQKPIKG SPYPRNYYRC SSSKGCLARK
201: QVERSNLDPN IFIVTYTGEH THPRPTHRNS LAGSTRNKSQ PVNPVPKPDT SPLSDTVKEE IHLSPTTPLK GNDDVQETNG DEDMVGQEVN MEEEEEEEEV
301: EEDDEEEEDD DDVDDLLIPN LAVRDRDDLF FAGSFPSWSA GSAGDGGG

Arabidopsis Description

WRKY27Probable WRKY transcription factor 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.