CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG92626
KRG94975
KRG97048
KRG97049
KRH13399
KRH18664
KRH20755
KRH34156
KRH62918
KRH68797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24570.1	KRG89812	AT3G56800.1	15733871
AT2G24570.1	KRG94975	AT3G56800.1	15733871
AT2G24570.1	KRH18664	AT3G56800.1	15733871
AT2G24570.1	KRH13399	AT5G13810.1	21798944
AT2G24570.1	KRH20755	AT5G13810.1	21798944
AT2G24570.1	KRH62918	AT5G13810.1	21798944
AT2G24570.1	KRG92626	AT5G28900.1	21798944
AT2G24570.1	KRG97048	AT5G28900.1	21798944
AT2G24570.1	KRG97049	AT5G28900.1	21798944
AT2G24570.1	KRH34156	AT5G28900.1	21798944
AT2G24570.1	KRH68797	AT5G28900.1	21798944
AT4G31550.1	KRG89812	AT3G56800.1	15733871
AT4G31550.1	KRG94975	AT3G56800.1	15733871
AT4G31550.1	KRH18664	AT3G56800.1	15733871

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02746	Soybean	nucleus	91.05	92.19
KRH37367	Soybean	nucleus	62.04	67.91
KRH12362	Soybean	nucleus	58.33	64.51
KRH52606	Soybean	nucleus	54.32	58.67
KRH61946	Soybean	nucleus, plastid	48.46	56.27
CDY20325	Canola	nucleus	49.07	56.18
CDX68763	Canola	nucleus	51.23	55.7
CDY60852	Canola	nucleus	51.23	55.7
CDX72310	Canola	nucleus	48.15	54.93
KRH16144	Soybean	nucleus	53.4	54.75
CDY36432	Canola	nucleus	47.53	54.61
KRH04945	Soybean	nucleus	52.47	53.8
Bra011282.1-P	Field mustard	nucleus	53.4	53.73
CDY13441	Canola	nucleus	48.46	53.58
AT4G31550.1	Thale cress	nucleus	53.7	53.54
CDY23304	Canola	nucleus	50.31	53.27
AT2G24570.1	Thale cress	nucleus	52.16	52.65
CDY45583	Canola	nucleus	52.78	52.62
Bra032084.1-P	Field mustard	nucleus	52.16	52.0
Bra023998.1-P	Field mustard	nucleus	51.54	50.91
Bra010231.1-P	Field mustard	nucleus	52.16	50.9
PGSC0003DMT400075531	Potato	nucleus	48.46	50.32
Solyc08g006320.2.1	Tomato	nucleus	50.62	50.0
PGSC0003DMT400024632	Potato	nucleus	51.54	50.0
KRH28430	Soybean	nucleus	43.21	43.61
KRH77042	Soybean	nucleus	42.9	43.3
KRH04545	Soybean	nucleus	44.14	43.07
Solyc12g096350.1.1	Tomato	nucleus	44.75	42.9
KRH57965	Soybean	nucleus	44.14	42.81
KRH67313	Soybean	nucleus	35.19	33.43
KRH71315	Soybean	nucleus	36.11	32.96
KRH05637	Soybean	nucleus	27.78	32.37
KRH32116	Soybean	extracellular	35.8	29.59
KRH15403	Soybean	cytosol, nucleus, plastid	22.22	26.09
KRH27887	Soybean	nucleus	16.67	25.23
KRH27073	Soybean	nucleus	18.21	22.43
KRH22261	Soybean	nucleus	18.21	22.26
KRH77587	Soybean	nucleus	16.36	21.63
KRH68270	Soybean	nucleus	16.36	20.95
KRH59007	Soybean	nucleus	16.36	20.78
KRH42896	Soybean	nucleus	16.36	20.31
KRH59972	Soybean	nucleus	17.9	20.14
KRH06582	Soybean	nucleus	20.68	20.0
KRH35230	Soybean	nucleus	18.21	19.87
KRG91594	Soybean	nucleus	19.14	19.31
KRH41244	Soybean	nucleus	17.28	19.18
KRH08822	Soybean	nucleus, plastid	15.12	19.07
KRG96534	Soybean	nucleus	15.74	17.96
KRH40377	Soybean	nucleus	19.14	17.82
KRH42254	Soybean	nucleus	23.46	17.72
KRH00856	Soybean	nucleus	19.14	17.66
KRH58373	Soybean	nucleus	22.53	16.98
KRH38335	Soybean	nucleus	18.83	16.4
KRH08826	Soybean	nucleus	19.14	15.2
KRH11863	Soybean	nucleus	22.84	14.15
KRH36880	Soybean	nucleus	22.22	14.01

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02008170	EnsemblPlantsGene:GLYMA_13G102000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1LVK7	InterPro:IPR003657	InterPro:IPR036576
EnsemblPlants:KRH19120	ProteinID:KRH19120	ProteinID:KRH19120.1	PFAM:PF03106	PFAM:PF10533	PFscan:PS50811
PANTHER:PTHR31282	PANTHER:PTHR31282:SF18	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00023D07BC	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	InterPro:Zn-cluster-dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:21734858..21736896

Molecular Weight (calculated)

34938.4 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.556

Length

324 amino acids

Sequence
(BLAST)

001: MTVDLVGAAK MGMEENIAIQ EAASAGLKSM EHLIRVLSSQ IPSSASSSSN AHHHRLNLNH LDCTEITDFT VSKFKQVINL LNRTGHARFR SAPSHPSPST
101: SLPSQPQPQP QPQPYALTLD FAKPVMLKSN PNPNPSSTDL SVSQYSKTKD TTTSSISPPV STTTSSFMSS ITADGSVSDG KIGPAIIAAG KPPLSSSHRK
201: RCHDATLSAG KASSSAHCHC SKRRKSRVKR MIRVPAISSK IADIPVDEYS WRKYGQKPIK GSPYPRGYYK CSSVRGCPAR KHVERAQDDP NMLIVTYEGE
301: HRHPQPRLPE TAAGAGGTFA AHPV

Best Arabidopsis Sequence Match ( AT4G31550.1 )
(BLAST)

001: MAVDLMRFPK IDDQTAIQEA ASQGLQSMEH LIRVLSNRPE QQHNVDCSEI TDFTVSKFKT VISLLNRTGH ARFRRGPVHS TSSAASQKLQ SQIVKNTQPE
101: APIVRTTTNH PQIVPPPSSV TLDFSKPSIF GTKAKSAELE FSKENFSVSL NSSFMSSAIT GDGSVSNGKI FLASAPLQPV NSSGKPPLAG HPYRKRCLEH
201: EHSESFSGKV SGSAYGKCHC KKSRKNRMKR TVRVPAISAK IADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSTFRGCPAR KHVERALDDP AMLIVTYEGE
301: HRHNQSAMQE NISSSGINDL VFASA

Arabidopsis Description

WRKY11Probable WRKY transcription factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.