CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93968
KRH02746
KRH03466
KRH05520
KRH05863
KRH07089
KRH13458
KRH15146
KRH15497
KRH19120
KRH21856
KRH29118
KRH42233
KRH42550
KRH44391
KRH47513
KRH51797
KRH54542
KRH56919
KRH58237
KRH58350
KRH58644
KRH60720
KRH61121
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28900.1	KRH44391	AT1G15570.1	21798944
AT5G28900.1	KRH47513	AT1G15570.1	21798944
AT5G28900.1	KRH05520	AT1G30120.1	21798944
AT5G28900.1	KRH15497	AT1G30120.1	21798944
AT5G28900.1	KRH42550	AT1G30120.1	21798944
AT5G28900.1	KRH58644	AT1G30120.1	21798944
AT5G28900.1	KRH13458	AT1G53510.1	21798944
AT5G28900.1	KRH21856	AT1G53510.1	21798944
AT5G28900.1	KRH05863	AT1G75400.1	21798944
AT5G28900.1	KRH15146	AT1G75400.1	21798944
AT5G28900.1	KRH51797	AT1G75400.1	21798944
AT5G28900.1	KRH61121	AT1G75400.1	21798944
AT5G28900.1	KRH03466	AT3G47620.1	21798944
AT5G28900.1	KRH54542	AT3G47620.1	21798944
AT5G28900.1	KRH56919	AT3G47620.1	21798944
AT5G28900.1	KRH63357	AT3G47620.1	21798944
AT5G28900.1	KRH42233	AT3G60360.1	21798944
AT5G28900.1	KRH58350	AT3G60360.1	21798944
AT5G28900.1	KRH02746	AT4G31550.1	21798944
AT5G28900.1	KRH19120	AT4G31550.1	21798944
AT5G28900.1	KRH29118	AT4G38770.1	21798944
AT5G28900.1	KRH60720	AT4G38770.1	21798944
AT5G28900.1	KRG93968	AT5G14390.1	21798944
AT5G28900.1	KRH07089	AT5G14390.1	21798944
AT5G28900.1	KRH58237	AT5G14390.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92401	Soybean	cytosol, plastid	50.76	63.29
KRH68797	Soybean	cytosol	96.95	35.57
KRG92626	Soybean	cytosol	87.31	32.03
KRH34156	Soybean	cytosol	86.29	31.66
Bra010012.1-P	Field mustard	cytosol	67.01	24.54
CDX86212	Canola	cytosol	67.01	24.54
CDY48668	Canola	cytosol	67.01	24.54
GSMUA_AchrUn_...	Banana	cytosol	66.5	24.17
Solyc04g010070.2.1	Tomato	plastid	64.97	23.75
AT5G28900.1	Thale cress	cytosol	64.47	23.69
AT5G28850.2	Thale cress	cytosol	64.47	23.69
GSMUA_Achr11P...	Banana	cytosol	64.97	23.66
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	63.96	23.29
KRH34399	Soybean	cytosol	63.45	23.11
Solyc05g054980.2.1	Tomato	cytosol	62.94	23.01
EER94083	Sorghum	cytosol	61.42	22.37
AT1G54450.1	Thale cress	cytosol	60.41	22.24
CDY44814	Canola	cytosol	60.91	22.22
Bra021340.1-P	Field mustard	cytosol	60.91	22.22
Zm00001d032708_P009	Maize	cytosol	59.9	21.85
TraesCS1D01G152300.1	Wheat	cytosol	59.9	21.81
TraesCS1B01G171200.1	Wheat	cytosol	59.9	21.81
HORVU1Hr1G040980.1	Barley	cytosol	59.9	21.81
TraesCS1A01G153900.1	Wheat	cytosol	59.9	21.81
Bra036126.1-P	Field mustard	cytosol	59.39	21.79
CDY57012	Canola	cytosol	59.39	21.79
CDY00020	Canola	cytosol	57.87	21.07
Zm00001d014037_P004	Maize	cytosol	60.91	20.91
KRH02218	Soybean	cytosol	13.71	5.66
KRH50907	Soybean	cytosol	13.71	5.66
CDY71370	Canola	extracellular	1.52	1.25
GSMUA_Achr8P19010_001	Banana	cytosol	0.0	0.0
KRG92399	Soybean	cytosol	0.0	0.0
KRH62662	Soybean	cytosol	0.0	0.0
KRG92392	Soybean	cytosol	0.0	0.0
KRG97049	Soybean	cytosol	0.0	0.0
KRG92395	Soybean	cytosol	0.0	0.0
KRG92396	Soybean	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02012173	EnsemblPlants:KRG97048	EnsemblPlantsGene:GLYMA_19G2486002	Gene3D:1.10.238.230	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7
ProteinID:KRG97048	ProteinID:KRG97048.1	SEG:seg	UniParc:UPI0006EDADCD	UniProt:A0A0R0F2Y1	MapMan:35.1

Description

hypothetical protein

Coordinates

chr19:+:49481593..49484000

Molecular Weight (calculated)

21484.8 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.141

Length

197 amino acids

Sequence
(BLAST)

001: MSMEVVGDTA SLEVDLLQLP EVSALALKSN LTFVETLFEQ WLSLPESNRL VTSLLNEAKS GAPLNVPGNR SSPNAASNSL PSMFPAGTAP PLSPRSTSGS
101: PRIVKQRVGP SNLGSPLKVV SEPVKEVIPQ FYFQFGRPPP NDLKEQCLIR IDHLFHDHMD GLQIHEFKSV TKEVCKLPSF FSTSLFRKID NGTGVVT

Best Arabidopsis Sequence Match ( AT1G03960.5 )
(BLAST)

001: MDIDGVDDDL HILDPELLQL PGLSPSPLKP TSLIADDLFS QWLSLPETAT LVKSLIDDAK SGTPTNKSKN LPSVFLSSST PPLSPRSSSG SPRFSRQRTS
101: PPSLHSPLRS LKEPKRQLIP QFYYQHGRPP AKELKEQCLS MVDQVFSNYI DGLHVDEFKS ITKQVCKLPS FLSPALFRKI DPNCTDIVTR DAFIKYWIDG
201: NMLTMDTASQ IYNILRQQGC SYLRQADFKP VLDELLATHP GLEFLRTISE FQERYAETVI YRIFYYINRS GTGCLTLREL RRGNLIAAMQ QLDEEDDINK
301: IIRYFSYEHF YVIYCKFWEL DGDHDCFIDK DNLIKYGNNA LTYRIVDRIF SQIPRKFTSK VEGKMSYEDF VYFILAEEDK SSEPSLEYWF KCVDLDGNGV
401: ITSNEMQFFF EEQLHRMECI TQEAVLFSDI LCQIIDMIGP EKENCITLQD LKGSKLSANV FNILFNLNKF MAFETRDPFL IRQVSLAYQW SFYSTQEGKK

Arabidopsis Description

B''EPSILONProbable serine/threonine protein phosphatase 2A regulatory subunit B''epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q84JI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.