Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G153900.1 | Wheat | cytosol | 99.82 | 99.82 |
| TraesCS1B01G171200.1 | Wheat | cytosol | 99.45 | 99.45 |
| HORVU1Hr1G040980.1 | Barley | cytosol | 99.08 | 99.08 |
| Os10t0476600-01 | Rice | cytosol, plasma membrane, plastid | 92.42 | 92.42 |
| EER94083 | Sorghum | cytosol | 91.5 | 91.5 |
| KRG92395 | Soybean | cytosol | 14.23 | 90.59 |
| Zm00001d032708_P009 | Maize | cytosol | 90.39 | 90.56 |
| GSMUA_Achr8P19010_001 | Banana | cytosol | 53.97 | 89.02 |
| KRG92392 | Soybean | cytosol | 18.48 | 85.47 |
| KRG97049 | Soybean | cytosol | 53.42 | 85.25 |
| Zm00001d014037_P004 | Maize | cytosol | 90.02 | 84.84 |
| CDY71370 | Canola | extracellular | 36.04 | 81.25 |
| KRH62662 | Soybean | cytosol | 7.95 | 81.13 |
| GSMUA_AchrUn_... | Banana | cytosol | 80.78 | 80.63 |
| GSMUA_Achr11P... | Banana | cytosol | 80.41 | 80.41 |
| KRG92396 | Soybean | cytosol | 11.09 | 77.92 |
| KRH68797 | Soybean | cytosol | 75.23 | 75.79 |
| VIT_07s0005g03730.t01 | Wine grape | cytosol | 75.6 | 74.77 |
| KRH34156 | Soybean | cytosol | 74.12 | 74.67 |
| KRG92626 | Soybean | cytosol | 73.94 | 74.49 |
| Solyc04g010070.2.1 | Tomato | plastid | 73.2 | 73.47 |
| CDY48668 | Canola | cytosol | 72.27 | 72.68 |
| CDX86212 | Canola | cytosol | 72.27 | 72.68 |
| Bra010012.1-P | Field mustard | cytosol | 72.27 | 72.68 |
| Solyc05g054980.2.1 | Tomato | cytosol | 72.27 | 72.54 |
| KRH34399 | Soybean | cytosol | 71.72 | 71.72 |
| AT5G28850.2 | Thale cress | cytosol | 70.79 | 71.46 |
| AT5G28900.1 | Thale cress | cytosol | 70.79 | 71.46 |
| CDY57012 | Canola | cytosol | 70.79 | 71.32 |
| Bra036126.1-P | Field mustard | cytosol | 70.79 | 71.32 |
| AT1G54450.1 | Thale cress | cytosol | 70.06 | 70.84 |
| Bra021340.1-P | Field mustard | cytosol | 70.43 | 70.56 |
| CDY44814 | Canola | cytosol | 70.43 | 70.56 |
| CDY00020 | Canola | cytosol | 70.06 | 70.06 |
| AT1G03960.1 | Thale cress | cytosol | 68.21 | 69.75 |
| CDY13127 | Canola | cytosol | 68.39 | 69.55 |
| Bra027527.1-P | Field mustard | cytosol | 68.39 | 69.42 |
| CDY36971 | Canola | cytosol | 67.47 | 68.87 |
| CDX86655 | Canola | cytosol | 66.17 | 67.93 |
| Bra030551.1-P | Field mustard | cytosol | 67.1 | 67.72 |
| CDY15483 | Canola | cytosol | 66.54 | 67.42 |
| TraesCS6D01G160100.1 | Wheat | cytosol | 63.59 | 64.18 |
| AT5G44090.2 | Thale cress | endoplasmic reticulum, extracellular | 65.99 | 62.3 |
| KRG97048 | Soybean | nucleus | 21.81 | 59.9 |
| VIT_14s0036g00730.t01 | Wine grape | extracellular | 20.33 | 59.78 |
| VIT_14s0036g00750.t01 | Wine grape | cytosol | 56.38 | 58.77 |
| KRG92401 | Soybean | cytosol, plastid | 16.27 | 55.7 |
| KRG92399 | Soybean | cytosol | 3.14 | 51.52 |
| TraesCS1D01G098600.1 | Wheat | cytosol, plastid | 19.22 | 21.4 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G152300.1 | EnsemblPlantsGene:TraesCS1D01G152300 | Gene3D:1.10.238.10 | Gene3D:1.10.238.220 | Gene3D:1.10.238.230 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 |
| PANTHER:PTHR14095 | PANTHER:PTHR14095:SF7 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg |
| SUPFAM:SSF47473 | MapMan:18.4.24.1.2.4 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:211950773..211958451
Molecular Weight (calculated)
61978.6 Da
IEP (calculated)
4.648
GRAVY (calculated)
-0.362
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEAARRDA SALDPELLQL PELAPGALRE NSSIAEALYL QWLVLPESSK LVKSLIEDAK AGATLNVAGS SASTNAASSS SLPSMFPAGS APPLSPRSTA
101: GSPRVMRRGS SAGPSSLGSP LKLVSEPVRE VIPQFYFKHG RPPPKDLREQ CLSRLDHLFF AGEGLQIQEF RPVIKDICKL PSYLSGVLFK KIDATCSGTV
201: TRDAFIDYWF NDNKITMDTA TQIFEILRKP GYSYLTQEDF KPVLKELLAS HPGLEFLQGT PEFQDRYAET VIYRIFYSIN RSGNGHLTLR ELKRGNLVAA
301: MQQLDEEEDI NKILRYFSYE HFYVIYCKFW ELDTDHDFLI DKENLIRYGN HSLTYRIVDR VFSQVPRKFT SMTEGKMGYE DFVYFILSEE DKSSEPSLEY
401: WFKCIDLDGN GILTTNEMQF FYEEQLHRME CMAQEPVLFE DILCQMIDMI GPENETYFTL RDLKKCKLSG NIFNILFNLN KFMAFETRDP FLIRQERENP
501: TLTEWDRFAH REYIRLSMEE DGEDASNGSG DVWDESLEAP F
101: GSPRVMRRGS SAGPSSLGSP LKLVSEPVRE VIPQFYFKHG RPPPKDLREQ CLSRLDHLFF AGEGLQIQEF RPVIKDICKL PSYLSGVLFK KIDATCSGTV
201: TRDAFIDYWF NDNKITMDTA TQIFEILRKP GYSYLTQEDF KPVLKELLAS HPGLEFLQGT PEFQDRYAET VIYRIFYSIN RSGNGHLTLR ELKRGNLVAA
301: MQQLDEEEDI NKILRYFSYE HFYVIYCKFW ELDTDHDFLI DKENLIRYGN HSLTYRIVDR VFSQVPRKFT SMTEGKMGYE DFVYFILSEE DKSSEPSLEY
401: WFKCIDLDGN GILTTNEMQF FYEEQLHRME CMAQEPVLFE DILCQMIDMI GPENETYFTL RDLKKCKLSG NIFNILFNLN KFMAFETRDP FLIRQERENP
501: TLTEWDRFAH REYIRLSMEE DGEDASNGSG DVWDESLEAP F
001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF
Arabidopsis Description
B''GAMMAProbable serine/threonine protein phosphatase 2A regulatory subunit B''gamma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.