CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13127	Canola	cytosol	97.74	97.37
AT5G44090.2	Thale cress	endoplasmic reticulum, extracellular	85.85	79.41
GSMUA_Achr8P19010_001	Banana	cytosol	49.06	79.27
CDY71370	Canola	extracellular	35.66	78.75
CDY15483	Canola	cytosol	79.25	78.65
CDX86655	Canola	cytosol	77.55	77.99
KRH62662	Soybean	cytosol	7.17	71.7
VIT_07s0005g03730.t01	Wine grape	cytosol	73.4	71.12
GSMUA_Achr11P...	Banana	cytosol	70.19	68.76
Zm00001d032708_P009	Maize	cytosol	69.43	68.15
GSMUA_AchrUn_...	Banana	cytosol	69.43	67.9
HORVU1Hr1G040980.1	Barley	cytosol	69.25	67.84
TraesCS1A01G153900.1	Wheat	cytosol	69.06	67.65
EER94083	Sorghum	cytosol	69.06	67.65
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	68.87	67.47
TraesCS1D01G152300.1	Wheat	cytosol	68.87	67.47
TraesCS1B01G171200.1	Wheat	cytosol	68.68	67.28
CDY48668	Canola	cytosol	67.55	66.54
CDX86212	Canola	cytosol	67.55	66.54
CDY44814	Canola	cytosol	66.6	65.37
CDY57012	Canola	cytosol	64.72	63.87
CDY00020	Canola	cytosol	64.91	63.59
Zm00001d014037_P004	Maize	cytosol	68.49	63.24
CDY13902	Canola	cytosol	16.98	20.13
CDX70827	Canola	nucleus	17.74	19.96
CDX92599	Canola	nucleus	17.92	19.79
CDY58103	Canola	nucleus	17.92	19.71
CDY02615	Canola	nucleus	17.74	19.5
CDX88930	Canola	nucleus	17.92	19.39

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	MapMan:18.4.24.1.2.4	GO:A0A078HGT9	UniProt:A0A078HGT9
EnsemblPlants:CDY36971	ProteinID:CDY36971	ProteinID:CDY36971.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00063124001	InterPro:IPR002048	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR14095	PANTHER:PTHR14095:SF7	SUPFAM:SSF47473	UniParc:UPI0004EDE1AB

Description

BnaC09g17870DBnaC09g17870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGT9]

Coordinates

chrLK032388:-:142912..147415

Molecular Weight (calculated)

61743.7 Da

IEP (calculated)

4.708

GRAVY (calculated)

-0.339

Length

530 amino acids

Sequence
(BLAST)

001: MDIEEVHILD PELLQLPGLS VKSNPLIAEE LFSHWLSLPD TSRLVKSLID DTKSSTPVSI SKNCANLNIA CASALPSLFL NSGTPPLSPR GSPRFSRQKT
101: SPFSLQSPLR SLREPKPQLI PQFYFQHGPP PAKELQEQCL SMVDHLFSDF IDGLRMDEFK TLTKEVCKLP SFLSSLLFRK IDVDSTAIVT RDAFIKYWVD
201: GHMLAMDVAS QIYNILRQPG CEYLRQADFK PVLDELLTTH PGLEFLRNTP EFQERYAETV IYRIFYYINR SGTGCITLRE LKRGNLVAAM QQVDEEDDIN
301: KVIRYFSYEH FYVIYCRFWE LDGDHDFLID KENLLKYGNH ALTYRIVDRI FSQVPRKFTS KVEGKMSYED FAYFILAEED KSSEPSLEYW FKCIDLDGDG
401: VISPNEMQFF YEEQLHRMEC ITQEPVLFED ILCQIFDMIK PEARKENCIT LKDLKASKLS RNVFNILFNL NKFMAFETRD PFLIRQEREN PTLTEWDRFA
501: QREYVRLSME EDEVSNGSAD VWDEPLESPF

Best Arabidopsis Sequence Match ( AT5G44090.1 )
(BLAST)

001: MEIDGGNDVQ ILDPELLQLP GLSPVSLKEN PHIAEELFSQ WLSLPETGRL VKSLIDDTKS STPVSVSKNC TSLNVACGSA LPSVFLNSGT PPLSPRGSPG
101: SPRFSRQKTS PSLQSPLKSV REPKRQLIPQ FYFQHGRPPA KELREQCISM VDQFFSNYID GLHMDEFKSI TKEVCKLPSF LSSVLFRKID TSGTGIVTRD
201: AFIKYWVDGH MLAMDVASQI YNILRQPGCK YLRQADFKPV LDELLTTHPG LEFLRNTPEF QERYAETVIY RIFYYINRSG TGCITLRELK RGNLITAMQQ
301: VDEEDDINKV IRYFSYEHFY VIYCRFWELD GDHDFLIDKE NLIKYGNHAL TYRIVDRIFS QVPRKFTSKV EGKMSYEDFA YFILAEEDKS SEPSLEYWFK
401: CIDLDGDGVI TPNEMQFFYE EQLHRMECIT QEPVLFEDIL CQIFDMIKPE KENCITLQDL KASKLSGNIF NILFNLNKFM AFETRDPFLI RQERENPTLT
501: EWDRFAQREY VRLSMEEDVE EVSNGSADVW DEPLESPF

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:TAIR;Acc:AT5G44090]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.