Factsheet for VIT_07s0005g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19010_001	Banana	cytosol	53.02	88.41
Os10t0476600-01	Rice	cytosol, plasma membrane, plastid	76.78	77.63
GSMUA_Achr11P...	Banana	cytosol	76.78	77.63
GSMUA_AchrUn_...	Banana	cytosol	76.78	77.49
EER94083	Sorghum	cytosol	76.23	77.08
Zm00001d032708_P009	Maize	cytosol	75.14	76.11
TraesCS1A01G153900.1	Wheat	cytosol	74.95	75.79
HORVU1Hr1G040980.1	Barley	cytosol	74.77	75.6
TraesCS1D01G152300.1	Wheat	cytosol	74.77	75.6
TraesCS1B01G171200.1	Wheat	cytosol	74.59	75.42
CDY13127	Canola	cytosol	72.39	74.44
Bra027527.1-P	Field mustard	cytosol	72.03	73.92
CDY36971	Canola	cytosol	71.12	73.4
AT1G03960.1	Thale cress	cytosol	70.75	73.16
Zm00001d014037_P004	Maize	cytosol	76.23	72.65
CDX86655	Canola	cytosol	68.92	71.54
Bra030551.1-P	Field mustard	cytosol	70.02	71.46
CDY15483	Canola	cytosol	69.29	70.97
AT5G44090.2	Thale cress	endoplasmic reticulum, extracellular	69.47	66.32
VIT_14s0036g00750.t01	Wine grape	cytosol	59.23	62.43
VIT_14s0036g00730.t01	Wine grape	extracellular	20.11	59.78
VIT_05s0020g01710.t01	Wine grape	cytosol	18.65	21.43

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.238.220	Gene3D:1.10.238.230	EntrezGene:100246385	wikigene:100246385	MapMan:18.4.24.1.2.4
ProteinID:CBI37142	ProteinID:CBI37142.3	UniProt:D7U325	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
EMBL:FN596502	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EntrezGene:LOC100246385
wikigene:LOC100246385	PFAM:PF13499	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR14095
PANTHER:PTHR14095:SF7	SUPFAM:SSF47473	UniParc:UPI0001BE48E8	ArrayExpress:VIT_07s0005g03730	EnsemblPlantsGene:VIT_07s0005g03730	EnsemblPlants:VIT_07s0005g03730.t01
unigene:Vvi.16276	RefSeq:XP_002272394	RefSeq:XP_002272394.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:6657568..6686271

Molecular Weight (calculated)

62961.6 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.386

Length

547 amino acids

Sequence
(BLAST)

001: MEPHKSRDIH PPEMVDAATL DPELLQLQEV SSFAVKASPQ LADELFAQWL SLPDTGRLVK SLINDAKAGA SFNASVNCSS ANSAANNPLP SLFPAGSAPP
101: ISPRSASSSP RVSKQRTSPS SLGSPLKLVT EPVREPIPQF YFQNGRPPPK ELKEQCLSRV NHIFDDHLDG LQINEFKSVT KDICRLPSFF SSALFRKIDT
201: DCIGIVTKDA FIKYWVDGNM LTADAATQIF RILKQPDCKY LTQADFKPVL QDLLATHPGL EFLQSTPEFQ ERYAETVIYR IFYYINRSGN GRLTLRELKR
301: GNLIAAMQHA DEEEDINKVL RYFSYEHFYV IYCKFWELDT DHDFLIDKEN LIRYGNHALT YRIVDRIFSQ VPRKFTSKIE GKMGYEDFVY FMLSEEDKSS
401: EPGLEYWFKC IDLDGNGVLT LNEMQFFYEE QLHRMECMAQ EPVLFEDILC QIVDMIAPER EEYITLRDLK GCKLSGNVFN ILFNLNKFMA FETRDPFLIR
501: QEREDPTLTE WDRFAHREYI RLSMEEDGED VSNGSAEVWD ESLEAPF

Best Arabidopsis Sequence Match ( AT5G28900.1 )
(BLAST)

001: MVDTVIPGDM ACLDADLLQL QEMSSFVLNS KPGFTQKLFD QWLSLPEAQR QVGSLLKDAV AGAPINVTGS ASGSNSATIP SMFPAGSAPP LSPRSCGSPR
101: TTKQRAPSNL GSTLKVVNEP VKEPIPQFYF QNGRPPPSEI KEQCMFRINH FFYGHMDGLQ IQEFKLVTRE ICKLPSFFST SLFRKIDLNN TGFVTRDAFI
201: DFWVNGNMLI MDTTTQIFKI LKQKDQSFIV KDDFKPLLKE LLATHPGLEF LQSTPEFQER YAETVTYRIF YYINRSGNGR ITFRELKRGN LIDAMLHADE
301: EEDINKVLRY FSYEHFYVIY CKFWELDTDH DFLIDKENLM RYGNHALTYR IVDRIFSQVA RKFTNKVEGK MGYEDFVYFI LAEEDKSSVP SLEYWFKCID
401: LDANGIITRN EMQFFYEEQL HRMECMAQEA VLFEDILCQM IDMIGPENES HITLHDLKGS KLSGNVFNIL FNLNKFMAFE TRDPFLIRQE RENPTLTDWD
501: RFAHREYIRL SMEEDVEDAS NGSAEVWDES SLEAPF

Arabidopsis Description

B''GAMMAProbable serine/threonine protein phosphatase 2A regulatory subunit B''gamma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZQ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.