Factsheet for VIT_05s0020g01710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0043g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18580.1	VIT_04s0043g00340.t01	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067500.2.1	Tomato	cytosol	94.96	94.56
KRH50907	Soybean	cytosol	93.7	93.5
KRH02218	Soybean	cytosol	92.23	92.03
GSMUA_Achr1P14730_001	Banana	cytosol	92.23	89.96
AT5G18580.1	Thale cress	nucleus	90.13	89.38
CDY02615	Canola	nucleus	90.13	89.0
TraesCS1B01G118200.1	Wheat	cytosol, plastid	89.71	87.86
TraesCS1A01G090100.1	Wheat	cytosol, plastid	89.71	87.86
TraesCS1D01G098600.1	Wheat	cytosol, plastid	89.71	87.86
EES17718	Sorghum	nucleus, plastid	90.13	87.55
CDY58103	Canola	nucleus	88.24	87.14
Bra023686.1-P	Field mustard	nucleus	88.24	87.14
CDX70827	Canola	nucleus	85.5	86.41
CDX88930	Canola	nucleus	88.03	85.51
Zm00001d010862_P002	Maize	nucleus, plastid	88.45	85.4
CDX92599	Canola	nucleus	84.24	83.54
Bra002169.1-P	Field mustard	nucleus	84.24	83.54
Zm00001d024857_P002	Maize	cytosol	86.97	82.8
CDY13902	Canola	cytosol	71.64	76.29
GSMUA_Achr9P20260_001	Banana	cytosol, mitochondrion	18.49	68.22
GSMUA_Achr9P20250_001	Banana	extracellular, golgi	39.08	59.42
VIT_07s0005g03730.t01	Wine grape	cytosol	21.43	18.65
VIT_14s0036g00750.t01	Wine grape	cytosol	18.28	16.76
VIT_14s0036g00730.t01	Wine grape	extracellular	6.3	16.3

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100247694	wikigene:100247694	MapMan:13.4.1.2.5	MapMan:18.4.24.1.2.4	ProteinID:CBI26096
ProteinID:CBI26096.3	ncoils:Coil	UniProt:D7T6H5	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
EMBL:FN595749	GO:GO:0000226	GO:GO:0000913	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005819
GO:GO:0005856	GO:GO:0007049	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043
GO:GO:0030865	InterPro:IPR002048	EntrezGene:LOC100247694	wikigene:LOC100247694	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR12085	PANTHER:PTHR12085:SF3	SUPFAM:SSF47473	UniParc:UPI00015C7BC9	ArrayExpress:VIT_05s0020g01710
EnsemblPlantsGene:VIT_05s0020g01710	EnsemblPlants:VIT_05s0020g01710.t01	unigene:Vvi.7749	RefSeq:XP_002275193	RefSeq:XP_002275193.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:3432657..3443017

Molecular Weight (calculated)

54771.2 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.447

Length

476 amino acids

Sequence
(BLAST)

001: MYSGSSDGEG HEAPPRKIPP ASSMLWVRNL RRFIGSGTGL GSEALMELET KRILLDIFKE KQQKSAEAGS IPSFYKKKPE EGSISHRVQR LAKYRFLRKQ
101: SDLLLNADDL DAMWVCLREN CVIDDATNAE KMNYEDFCHI ASVCTEQIGP KCRRFFSPSN FMKFEKDESG RIAILPFYLY VMRTVSLTQA RIDMSELDED
201: SDGFLQPHEM EAYIRGLIPN LAQLRDMPAA FVQMYCRIAA HKFFFFCDPH RRGKACIKKV LLSNCLQELM ELHQESEEEV TDTEQAENWF SLTSAQRICD
301: MFLALDKDMN GTLSKQELRE YADGTLTEIF IERAFDEHVR RGKSGGGNAR EMDFESFLDF VLALENKDTP EGLTYLFRCL DLHGRGYLTT ADIHTLFRDV
401: HQKWIEGGNY ELCIEDVRDE IWDMVKPADE LRITLADLLA CKQGGTVASM LIDVRGFWAH DNRENLLQEE EEPEEE

Best Arabidopsis Sequence Match ( AT5G18580.1 )
(BLAST)

001: MYSGSSDGES HDTSTQRKIP PASSMLWVRN LRRYIGSGAG LGSEALMELE TKRILLEIFK EKQQKSQEAG TIPSFYKKKP EEGSISQRVQ KLAKYRFLKK
101: QSDLLLNADD LAAMWVCLRE NCVIDDATGA EKMNYEDFCH IASVCTEQIG PKCRRFFSPS NFMKFEKDEA GRIAILPFYL YVMRTVSLTQ ARIDMSELDE
201: DSDGFLHSDE MESYIGGLIP NLAQLRDMPP AFNQMYCRIA SQKFFFFCDP HRRGRACIKK ILLSNCLQEL MELHQESEEE VTDTEQAENW FSLTSAQRIC
301: DMFLALDKDM SGSLCKQELK EYADGTLTEI FIERVFDEHV RRGKIVAGNS REMDFDSFLD FVLALENKDT PEGLTYLFRC LDLQGRGFLT TADIHSLFRD
401: VHQKWIEGGN YELCIEDVRD EIWDMVKPSD PLKITLGDLL GCKQGGTVAS MLIDVRGFWA HDNRENLLQE EEEPPEEESQ

Arabidopsis Description

TON2Probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FEE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.