Factsheet for VIT_04s0043g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0146g00220.t01
VIT_03s0038g00350.t01
VIT_06s0004g06150.t01
VIT_16s0098g00600.t01
VIT_17s0000g02230.t01
VIT_17s0000g03580.t01
VIT_17s0000g07350.t01
VIT_19s0014g03090.t01
VIT_19s0090g00020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	VIT_06s0004g06150.t01	AT1G07310.1	21798944
AT5G16560.1	VIT_17s0000g03580.t01	AT1G18400.1	21798944
AT5G16560.1	VIT_17s0000g02230.t01	AT3G17860.1	21798944
AT5G16560.1	VIT_19s0090g00020.t01	AT4G27060.1	21798944
AT5G16560.1	VIT_19s0014g03090.t01	AT4G27460.1	21798944
AT5G16560.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944
AT5G16560.1	VIT_01s0146g00220.t01	AT5G14070.1	21798944
AT5G16560.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944
AT5G16560.1	VIT_17s0000g07350.t01	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01380.t01	Wine grape	mitochondrion	9.42	57.89
Bra008613.1-P	Field mustard	nucleus	29.76	47.77
CDX70701	Canola	nucleus	38.97	47.27
VIT_12s0028g00980.t01	Wine grape	nucleus	7.28	47.22
CDX78699	Canola	nucleus	38.76	46.89
CDY28659	Canola	nucleus	30.41	46.56
CDX69443	Canola	nucleus	38.97	46.31
CDY67252	Canola	nucleus	38.97	46.19
AT5G16560.1	Thale cress	nucleus	39.61	45.91
CDX85500	Canola	nucleus	38.97	45.61
CDY38105	Canola	nucleus	38.76	45.48
VIT_02s0012g01940.t01	Wine grape	nucleus	35.55	45.11
VIT_16s0039g01900.t01	Wine grape	nucleus	28.48	41.18
PGSC0003DMT400047532	Potato	nucleus	31.05	40.17
Bra023570.1-P	Field mustard	cytosol	34.05	39.95
Solyc08g005260.1.1	Tomato	nucleus	30.62	39.61
VIT_08s0058g00250.t01	Wine grape	nucleus	9.64	38.79
KRH39002	Soybean	nucleus	32.98	37.38
KRH48713	Soybean	nucleus	32.55	36.54
KXG25180	Sorghum	nucleus	36.83	36.21
Os08t0426866-00	Rice	nucleus	35.76	35.68
GSMUA_Achr4P04510_001	Banana	nucleus	26.77	33.33
VIT_00s1624g00010.t01	Wine grape	nucleus	8.78	33.33
VIT_18s0001g11390.t01	Wine grape	nucleus	22.91	32.52
Zm00001d032249_P002	Maize	plastid	32.33	31.33
VIT_06s0004g07000.t01	Wine grape	nucleus	10.06	26.55
VIT_12s0028g02080.t01	Wine grape	nucleus	12.42	23.97
Bra006360.1-P	Field mustard	nucleus	28.27	18.01
VIT_01s0137g00050.t01	Wine grape	nucleus	11.56	17.82
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	12.42	12.37

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100244905	wikigene:100244905	MapMan:15.5.2.3	EMBL:AM425288	ProteinID:CAN77882
ProteinID:CAN77882.1	ProteinID:CAQ58594	ProteinID:CAQ58594.1	ProteinID:CCB51855	ProteinID:CCB51855.1	EMBL:CU914148
UniProt:F6HI08	EMBL:FN595763	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212
InterPro:Homeobox-like_sf	EntrezGene:LOC100244905	wikigene:LOC100244905	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496
PANTHER:PTHR31496:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00021090A9	ArrayExpress:VIT_04s0043g00340
EnsemblPlantsGene:VIT_04s0043g00340	EnsemblPlants:VIT_04s0043g00340.t01	unigene:Vvi.25266	RefSeq:XP_002266463	RefSeq:XP_002266463.1	RefSeq:XP_010648942.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:13641069..13649842

Molecular Weight (calculated)

51226.5 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.670

Length

467 amino acids

Sequence
(BLAST)

001: MPLEGVFIEP SSNPVPDLSL HISPPNNTSS PTSICNISSN EGGSNTNLLG QCQALKSDSN TSVRSNLQAY TELSLAHAAN VMDEDGRCSR NFTVGADQEQ
101: LHNPYHQNRH HHLSHHPNNN LNHINHGVSL LDVSDVLRPI KGIPVYHNRS FPFLPLDHSR EKDSRMNLYQ LSYPSWSSSL APSSSCSSLC SSSVSHPPSP
201: YFGGGLDPMS ILNSGPNTSS SAYRIAAAAR LNGLSSDAFK SHQLHHHHVP SHHGVGPSEA SHGMMRSRFI PKLPTKRSMR APRMRWTSTL HARFVHAVEL
301: LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD KPAASSGQSD GSGEEDISPM GNASDCGLCR FTDQRGASEG SLQQEIDYPS TNLWSNSSSR
401: EAWLQQNSSE MDGLKTASFP SQQRSGHQIE ECNSTLLKDY LGPNLDCKNP SLEFTLGRPD WHGKEHD

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.