CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94259
EER95434
EER96348
EER98873
EER99458
EES05136
EES05487
EES10652
EES10725
EES15016
KXG33434
KXG33717
KXG37326
KXG38192
KXG38242

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	KXG33717	AT1G07310.1	21798944
AT5G16560.1	EER98873	AT3G17860.1	21798944
AT5G16560.1	EES15016	AT3G17860.1	21798944
AT5G16560.1	EER96348	AT3G44720.1	21798944
AT5G16560.1	EES10725	AT3G44720.1	21798944
AT5G16560.1	EER94259	AT3G58500.1	21798944
AT5G16560.1	EER95434	AT3G58500.1	21798944
AT5G16560.1	KXG37326	AT3G58500.1	21798944
AT5G16560.1	EER99458	AT4G27060.1	21798944
AT5G16560.1	EES05487	AT4G27460.1	21798944
AT5G16560.1	KXG38242	AT4G27460.1	21798944
AT5G16560.1	KXG38192	AT4G39050.1	21798944
AT5G16560.1	EES05136	AT5G14070.1	21798944
AT5G16560.1	EES10652	AT5G14070.1	21798944
AT5G16560.1	KXG33434	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0426866-00	Rice	nucleus	57.05	57.91
Zm00001d032249_P002	Maize	plastid	49.68	48.96
KXG35581	Sorghum	nucleus	51.58	46.85
Bra008613.1-P	Field mustard	nucleus	24.21	39.52
CDX78699	Canola	nucleus	31.37	38.6
Solyc06g066340.2.1	Tomato	nucleus	23.58	38.49
CDX70701	Canola	nucleus	30.95	38.18
CDY28659	Canola	nucleus	24.42	38.03
AT5G16560.1	Thale cress	nucleus	31.58	37.22
CDY67252	Canola	nucleus	30.74	37.06
CDX69443	Canola	nucleus	30.53	36.9
VIT_04s0043g00340.t01	Wine grape	nucleus	36.21	36.83
CDY38105	Canola	nucleus	30.74	36.68
CDX85500	Canola	nucleus	30.53	36.34
KRH39002	Soybean	nucleus	30.32	34.95
KRH48713	Soybean	nucleus	30.11	34.38
Bra023570.1-P	Field mustard	cytosol	27.16	32.41
EES13398	Sorghum	nucleus	25.47	32.18
PGSC0003DMT400043200	Potato	nucleus	26.74	31.91
GSMUA_Achr4P04510_001	Banana	nucleus	23.58	29.87
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	21.68	27.84
EER93393	Sorghum	mitochondrion, plastid	20.0	24.87
EER91215	Sorghum	nucleus	20.21	22.48
OQU79478	Sorghum	nucleus	20.42	21.0
OQU76857	Sorghum	nucleus	10.11	18.75
EES15503	Sorghum	nucleus	13.26	17.21
EES09087	Sorghum	nucleus	12.84	16.8
KXG31083	Sorghum	nucleus	10.53	15.62
EES11274	Sorghum	nucleus	9.89	15.06
Bra006360.1-P	Field mustard	nucleus	21.47	13.92
KXG40258	Sorghum	nucleus	11.58	13.55
OQU76531	Sorghum	nucleus	13.26	12.3
EES04827	Sorghum	nucleus	12.84	11.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A1B6PHM7	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009791	GO:GO:0009987	GO:GO:0010158	GO:GO:0010229	GO:GO:0030154
InterPro:Homeobox-like_sf	EnsemblPlants:KXG25180	ProteinID:KXG25180	ProteinID:KXG25180.1	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31496	PANTHER:PTHR31496:SF11	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3007G132000	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00081AD4DC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:55103092..55109000

Molecular Weight (calculated)

49312.9 Da

IEP (calculated)

8.500

GRAVY (calculated)

-0.539

Length

475 amino acids

Sequence
(BLAST)

001: MEARAASAPD LSLHISLPSS TTASSPSAPA PGLGAAGGAG RGAQQPAAGG DPWRRLNGST ASTELSLSPP PRQQEAVAAG DVLPWRFRPP PATNNYSSST
101: TAEVATFVPV TVPRLSFDAA AEAEAARARP INGVPVYSSP RAGAAHPFLG GGGGEYRQQG HHHSKAAGLY NNPYHSSSWP SSMLRSTTTT TSPGAVAPSA
201: SDPAAASSYL SPPSAYHRML SSTGRLHLQG VLADTLRGYG GGGHHQHQHL GSLAAARYMP RLPVSRRGMR APRMRWTSSL HARFVHAVEL LGGHERATPK
301: SVLELMDVKD LTLAHVKSHL QMYRTVKSTD KPATSSGPGD GGGGSGDDDL PCAQRAPSSS AGREVSPQAF TGHRSASSEG AASHAGGDVE CSSADDSDGG
401: RPRSASSSRG QWLPRNACNA DTRHLVGVSS TFEDMEEPCG SVGLQQASRS HEMSCPTPSL EFTLGRPNWN GAEHD

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.