Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P23970_001 | Banana | nucleus | 32.8 | 60.0 |
| GSMUA_Achr10P... | Banana | nucleus | 42.67 | 57.55 |
| GSMUA_Achr9P23320_001 | Banana | nucleus | 32.53 | 53.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.2 | 51.75 |
| GSMUA_Achr3P00380_001 | Banana | nucleus | 34.4 | 49.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.93 | 48.23 |
| GSMUA_Achr2P18070_001 | Banana | nucleus | 33.33 | 46.47 |
| GSMUA_Achr1P06280_001 | Banana | mitochondrion, nucleus | 49.87 | 45.28 |
| GSMUA_Achr2P06700_001 | Banana | cytosol, nucleus, plastid | 20.0 | 44.38 |
| GSMUA_Achr11P... | Banana | nucleus | 27.2 | 43.04 |
| GSMUA_Achr7P00680_001 | Banana | cytosol, golgi, nucleus | 24.53 | 41.07 |
| GSMUA_Achr1P22100_001 | Banana | nucleus | 23.73 | 40.64 |
| GSMUA_Achr5P00310_001 | Banana | nucleus | 9.07 | 37.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.67 | 36.74 |
| GSMUA_Achr9P30700_001 | Banana | mitochondrion | 10.4 | 35.78 |
| Bra008613.1-P | Field mustard | nucleus | 27.2 | 35.05 |
| GSMUA_Achr2P13320_001 | Banana | nucleus, plastid | 25.6 | 34.78 |
| PGSC0003DMT400047532 | Potato | nucleus | 33.33 | 34.63 |
| CDY28659 | Canola | nucleus | 27.73 | 34.1 |
| Solyc08g005260.1.1 | Tomato | nucleus | 32.8 | 34.07 |
| GSMUA_Achr10P... | Banana | nucleus | 18.93 | 33.97 |
| GSMUA_Achr4P32400_001 | Banana | plastid | 22.4 | 33.47 |
| GSMUA_Achr4P23160_001 | Banana | nucleus, plastid | 24.0 | 33.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.27 | 32.62 |
| CDX78699 | Canola | nucleus | 32.53 | 31.61 |
| CDX85500 | Canola | nucleus | 33.6 | 31.58 |
| CDX70701 | Canola | nucleus | 32.27 | 31.43 |
| CDY38105 | Canola | nucleus | 33.33 | 31.41 |
| GSMUA_Achr7P02420_001 | Banana | nucleus | 29.33 | 31.07 |
| GSMUA_Achr8P30770_001 | Banana | nucleus | 29.33 | 30.99 |
| CDX69443 | Canola | nucleus | 32.27 | 30.79 |
| CDY67252 | Canola | nucleus | 32.27 | 30.71 |
| AT5G16560.1 | Thale cress | nucleus | 32.53 | 30.27 |
| GSMUA_Achr8P22900_001 | Banana | nucleus | 29.33 | 29.18 |
| Bra023570.1-P | Field mustard | cytosol | 30.67 | 28.89 |
| KRH39002 | Soybean | nucleus | 29.87 | 27.18 |
| VIT_04s0043g00340.t01 | Wine grape | nucleus | 33.33 | 26.77 |
| KRH48713 | Soybean | nucleus | 29.33 | 26.44 |
| KXG25180 | Sorghum | nucleus | 29.87 | 23.58 |
| Os08t0426866-00 | Rice | nucleus | 28.8 | 23.08 |
| Zm00001d032249_P002 | Maize | plastid | 29.6 | 23.03 |
| GSMUA_Achr7P03510_001 | Banana | nucleus | 12.27 | 22.33 |
| GSMUA_Achr11P... | Banana | nucleus | 12.53 | 20.09 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 13.6 | 17.83 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 13.6 | 17.47 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 11.47 | 17.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.07 | 16.61 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 14.4 | 16.27 |
| GSMUA_Achr7P13880_001 | Banana | nucleus | 15.2 | 13.9 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 13.87 | 13.76 |
| Bra006360.1-P | Field mustard | nucleus | 22.67 | 11.6 |
| GSMUA_Achr10P... | Banana | nucleus | 16.0 | 11.58 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr4G04510_001 |
| EnsemblPlants:GSMUA_Achr4P04510_001 | EnsemblPlants:GSMUA_Achr4T04510_001 | InterPro:Homeobox-like_sf | UniProt:M0SL18 | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PANTHER:PTHR31496 | PANTHER:PTHR31496:SF10 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000294AD0D |
| SEG:seg | : | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G04510_001]
Coordinates
chr4:+:3573709..3577978
Molecular Weight (calculated)
42386.0 Da
IEP (calculated)
7.052
GRAVY (calculated)
-0.509
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MELFSSQPDL SLQISPPDMT PASALMEKAE SNTSEVSLAA RSTAVSTTTS NTTLLLHPLP HHHHHHLHFH HHHHHHPLLH QGYHQDLSLL RPIRGIPVYQ
101: NPPTSPLMPP YQQQQLLCDS SPSTEFNHFA TTQGLSRSRY LPSRFPIKRS MRGPRMRWTS ALHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS
201: HLQMYRSVKT TDRPTNPSAV QSDGFENRSF GEVSDDNLVE VHNLQNSESS THNGRPDAHH GINQWGHSSS WGSFSDDLVS DSTTNGSMES FKEMPSERFE
301: MYRDLNSPCL SGTTSQSRLN LEITLEFLEE ASCTSMNGIR RYISIIILLV FSLYEGKDPL FSICLIYRLF TNKSL
101: NPPTSPLMPP YQQQQLLCDS SPSTEFNHFA TTQGLSRSRY LPSRFPIKRS MRGPRMRWTS ALHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS
201: HLQMYRSVKT TDRPTNPSAV QSDGFENRSF GEVSDDNLVE VHNLQNSESS THNGRPDAHH GINQWGHSSS WGSFSDDLVS DSTTNGSMES FKEMPSERFE
301: MYRDLNSPCL SGTTSQSRLN LEITLEFLEE ASCTSMNGIR RYISIIILLV FSLYEGKDPL FSICLIYRLF TNKSL
001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEVRY IPFYKYNYIY ANMFCV
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEVRY IPFYKYNYIY ANMFCV
Arabidopsis Description
KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.