Factsheet for GSMUA_Achr1P21010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21010_001
GSMUA_Achr6P09740_001
GSMUA_Achr9P00560_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	GSMUA_Achr10P...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G18400.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G18400.1	21336258
AT1G25330.1	GSMUA_Achr10P...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G25330.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G25330.1	21336258
AT1G25330.1	GSMUA_Achr10P...	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr11P...	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr1P21010_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr6P09740_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_Achr9P00560_001	AT1G73830.1	21336258
AT1G25330.1	GSMUA_AchrUn_...	AT1G73830.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	36.7	55.37
GSMUA_AchrUn_...	Banana	nucleus	49.44	48.71
GSMUA_Achr9P00560_001	Banana	nucleus	46.07	48.62
GSMUA_Achr10P...	Banana	nucleus	34.46	47.67
CDY45873	Canola	nucleus	32.96	44.22
CDX82053	Canola	cytosol	19.1	43.59
VIT_01s0011g03720.t01	Wine grape	nucleus	40.82	42.25
GSMUA_Achr6P09740_001	Banana	nucleus	36.33	42.17
Bra025910.1-P	Field mustard	nucleus	38.58	41.53
KRH39174	Soybean	nucleus	42.32	41.39
KRH48495	Soybean	nucleus	41.95	41.18
CDX73020	Canola	nucleus	40.07	40.84
KRH41647	Soybean	nucleus	38.2	40.48
Bra010993.1-P	Field mustard	nucleus	33.71	40.18
CDY67050	Canola	nucleus	39.33	40.08
Bra015960.1-P	Field mustard	nucleus	39.33	40.08
VIT_17s0000g03580.t01	Wine grape	nucleus	39.33	39.62
AT1G73830.1	Thale cress	nucleus	38.58	39.46
CDY26165	Canola	nucleus	38.58	39.16
CDY65027	Canola	nucleus	38.58	39.16
KRH60345	Soybean	nucleus	35.96	39.02
AT1G25330.1	Thale cress	nucleus	32.58	39.01
CDY36107	Canola	nucleus	32.58	38.84
KRH15645	Soybean	nucleus	37.08	38.82
KRH05373	Soybean	nucleus	37.08	38.22
Solyc03g119390.2.1	Tomato	nucleus	38.2	37.78
AT1G18400.1	Thale cress	nucleus	36.7	37.69
CDY24404	Canola	nucleus	31.46	37.5
CDY47737	Canola	nucleus	36.33	37.02
Bra008113.1-P	Field mustard	nucleus	36.33	37.02
PGSC0003DMT400014656	Potato	nucleus	37.08	35.87
PGSC0003DMT400013766	Potato	nucleus	36.33	35.66
Solyc12g036470.1.1	Tomato	nucleus	35.58	34.93
Solyc04g007300.2.1	Tomato	nucleus, plastid	36.7	33.11
GSMUA_Achr10P...	Banana	nucleus	29.96	32.0
GSMUA_Achr5P23700_001	Banana	nucleus	24.34	25.49
Zm00001d019127_P001	Maize	plastid	16.85	14.71

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21010_001	EnsemblPlants:GSMUA_Achr1T21010_001	EnsemblPlantsGene:GSMUA_Achr1G21010_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000294F060	UniProt:M0S1Q9	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G21010_001]

Coordinates

chr1:-:15818394..15820316

Molecular Weight (calculated)

29675.0 Da

IEP (calculated)

5.880

GRAVY (calculated)

-0.606

Length

267 amino acids

Sequence
(BLAST)

001: MGEFVDAERF ECLKPSLPFM EMDTNLELMR QLAELNGSAM HSPSMGLMDY SEEYYLPHQS EFSIPYIDDL TGPPAERQKP IAESQPAGSV GEQSHGGRKR
101: KMIAESNASS HNFSEVYSVI GSAEGSESGR RRKSNSKEAG KPKEVVHVRA RRGQATDSHS LAERVRRRKI NERMRCLQDL VPGCYKTMGM AGMLDEIINY
201: VQSLQNQVEF LSMKLSAASS FYDYSLGVEA VAITQVDGAY EGEEAERAQR KGHGDCTSVH SISMPSF

Best Arabidopsis Sequence Match ( AT1G18400.1 )
(BLAST)

001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQRAKARETV EMGRQTRDGS PVFHLSTWSL

Arabidopsis Description

BEE1Transcription factor BEE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ13]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.