Factsheet for VIT_01s0011g03720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03720.t01
VIT_10s0003g01480.t01
VIT_17s0000g03580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	VIT_17s0000g03580.t01	AT1G18400.1	21336258
AT1G25330.1	VIT_01s0011g03720.t01	AT1G25330.1	21336258
AT1G25330.1	VIT_17s0000g03580.t01	AT1G73830.1	21336258
AT1G25330.1	VIT_10s0003g01480.t01	AT4G18710.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	31.78	46.33
GSMUA_Achr10P...	Banana	nucleus	33.33	44.56
Bra010993.1-P	Field mustard	nucleus	38.37	44.2
VIT_14s0006g02850.t01	Wine grape	nucleus	42.64	44.18
CDY36107	Canola	nucleus	37.6	43.3
AT1G25330.1	Thale cress	nucleus	36.82	42.6
CDY24404	Canola	nucleus	36.82	42.41
GSMUA_Achr6P09740_001	Banana	nucleus	36.43	40.87
GSMUA_Achr1P21010_001	Banana	nucleus	42.25	40.82
VIT_17s0000g03580.t01	Wine grape	nucleus	41.47	40.38
Solyc04g007300.2.1	Tomato	nucleus, plastid	45.74	39.86
GSMUA_AchrUn_...	Banana	nucleus	37.21	35.42
GSMUA_Achr9P00560_001	Banana	nucleus	34.5	35.18
Zm00001d019127_P001	Maize	plastid	18.22	15.36

Protein Annotations

EntrezGene:100264677	wikigene:100264677	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EMBL:AM447422
ProteinID:CAN76460	ProteinID:CAN76460.1	ProteinID:CCB50902	ProteinID:CCB50902.1	UniProt:F6HFN6	EMBL:FN595752
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	GO:GO:2000488	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EntrezGene:LOC100264677	wikigene:LOC100264677	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF128	SMART:SM00353	SUPFAM:SSF47459	TIGR:TC52354	UniParc:UPI00015C7F4A	ArrayExpress:VIT_01s0011g03720
EnsemblPlantsGene:VIT_01s0011g03720	EnsemblPlants:VIT_01s0011g03720.t01	unigene:Vvi.14218	RefSeq:XP_002279412	RefSeq:XP_002279412.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:3368571..3370248

Molecular Weight (calculated)

28772.8 Da

IEP (calculated)

7.368

GRAVY (calculated)

-0.640

Length

258 amino acids

Sequence
(BLAST)

001: MAEFAANLQS LKPSSLEMNS NMELMNNRSA PENSHMNGHG FMAFSNVGFS IHHQQEFPVN FRDNTQSPVH AGGLSAVQVL QFSSQPGDFG QETKTGKVNF
101: VSSPPASGSE FLGDNKNLGG RKRKRSNERE NNKPREVIHV RAKRGQATDS HSLAERVRRE KINEKLRCLQ DLVPGCYKTM GMAVMLDVII NYVQSLQNQI
201: EFLSMKLSAA STFYDFNSSE AEALETMQGT NAYEVHEVER SVKEGYGGPS HLHSTWPF

Best Arabidopsis Sequence Match ( AT1G25330.1 )
(BLAST)

001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF

Arabidopsis Description

BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.