CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73020
CDX78886
CDX82053
CDX99437
CDY24404
CDY26165
CDY34051
CDY36107
CDY45873
CDY47737
CDY62551
CDY64921
CDY65027
CDY67050
CDY69647
CDY70859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	CDY26165	AT1G18400.1	21336258
AT1G25330.1	CDY65027	AT1G18400.1	21336258
AT1G25330.1	CDY24404	AT1G25330.1	21336258
AT1G25330.1	CDY36107	AT1G25330.1	21336258
AT1G25330.1	CDX73020	AT1G73830.1	21336258
AT1G25330.1	CDX82053	AT1G73830.1	21336258
AT1G25330.1	CDY45873	AT1G73830.1	21336258
AT1G25330.1	CDY47737	AT1G73830.1	21336258
AT1G25330.1	CDY67050	AT1G73830.1	21336258
AT1G25330.1	CDX78886	AT4G18710.1	21336258
AT1G25330.1	CDX99437	AT4G18710.1	21336258
AT1G25330.1	CDY34051	AT4G18710.1	21336258
AT1G25330.1	CDY62551	AT4G18710.1	21336258
AT1G25330.1	CDY64921	AT4G18710.1	21336258
AT1G25330.1	CDY69647	AT4G18710.1	21336258
AT1G25330.1	CDY70859	AT4G18710.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36107	Canola	nucleus	94.64	94.64
Bra010993.1-P	Field mustard	nucleus	88.39	88.39
AT1G25330.1	Thale cress	nucleus	76.34	76.68
CDX82053	Canola	cytosol	22.32	42.73
CDY45873	Canola	nucleus	36.61	41.21
GSMUA_Achr10P...	Banana	nucleus	33.93	39.38
GSMUA_Achr11P...	Banana	nucleus	30.8	38.98
VIT_01s0011g03720.t01	Wine grape	nucleus	42.41	36.82
CDX73020	Canola	nucleus	38.39	32.82
GSMUA_Achr6P09740_001	Banana	nucleus	33.48	32.61
CDY67050	Canola	nucleus	37.95	32.44
CDY26165	Canola	nucleus	37.95	32.32
Solyc04g007300.2.1	Tomato	nucleus, plastid	42.41	32.09
CDY47737	Canola	nucleus	37.5	32.06
CDY65027	Canola	nucleus	37.5	31.94
GSMUA_Achr1P21010_001	Banana	nucleus	37.5	31.46
GSMUA_AchrUn_...	Banana	nucleus	35.71	29.52
GSMUA_Achr9P00560_001	Banana	nucleus	33.04	29.25
CDY42693	Canola	nucleus	20.98	16.79
CDY24785	Canola	nucleus	22.32	16.67
CDY30890	Canola	mitochondrion	13.39	15.46
CDY30317	Canola	nucleus	21.88	14.8
CDY53074	Canola	nucleus	21.43	14.33
CDY20923	Canola	nucleus	20.98	13.78
CDY46300	Canola	nucleus	20.54	13.65
CDY25162	Canola	nucleus	20.54	13.65
CDY51216	Canola	nucleus	20.09	13.55
CDY29225	Canola	nucleus	20.54	13.29

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078GGE3	UniProt:A0A078GGE3	EnsemblPlants:CDY24404
ProteinID:CDY24404	ProteinID:CDY24404.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00026641001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF128	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEEEC4	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaCnng04710DBnaCnng04710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGE3]

Coordinates

chrLK032158:-:206819..208398

Molecular Weight (calculated)

25504.1 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.700

Length

224 amino acids

Sequence
(BLAST)

001: MARYEPYNYN IGVNPSLPHI NQTQELMTLD LPVSTTPSSF MIFSNGDLVD ARHNNSHFSP NLLHGDLGRK DKKEESGSKR KRKRSEEEES INEDDVEKPR
101: DVVHVRAKRG QATDSHSLAE RVRREKINER LKCLQDLVPG CYKTMGMAVM LEVIIDYVRS LQNQIEFLSM KLSAASAYYD LNSLDIEPTD TFQGGNMYSA
201: EEMEKILRES VGTQPPNFSS TLPF

Best Arabidopsis Sequence Match ( AT1G25330.1 )
(BLAST)

001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF

Arabidopsis Description

BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.