Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015960.1-P | Field mustard | nucleus | 95.04 | 95.04 |
| CDY67050 | Canola | nucleus | 94.66 | 94.66 |
| AT1G73830.1 | Thale cress | nucleus | 73.28 | 73.56 |
| CDY45873 | Canola | nucleus | 51.15 | 67.34 |
| CDY47737 | Canola | nucleus | 66.79 | 66.79 |
| CDX82053 | Canola | cytosol | 26.34 | 58.97 |
| CDY65027 | Canola | nucleus | 56.11 | 55.89 |
| CDY26165 | Canola | nucleus | 56.11 | 55.89 |
| KRH60345 | Soybean | nucleus | 44.27 | 47.15 |
| KRH41647 | Soybean | nucleus | 44.66 | 46.43 |
| VIT_17s0000g03580.t01 | Wine grape | nucleus | 43.89 | 43.4 |
| GSMUA_Achr10P... | Banana | nucleus | 31.3 | 42.49 |
| PGSC0003DMT400014656 | Potato | nucleus | 44.66 | 42.39 |
| Solyc12g036470.1.1 | Tomato | nucleus | 43.13 | 41.54 |
| PGSC0003DMT400013766 | Potato | nucleus | 43.13 | 41.54 |
| Solyc03g119390.2.1 | Tomato | nucleus | 42.75 | 41.48 |
| KRH39174 | Soybean | nucleus | 42.75 | 41.03 |
| KRH48495 | Soybean | nucleus | 42.37 | 40.81 |
| GSMUA_Achr1P21010_001 | Banana | nucleus | 40.84 | 40.07 |
| GSMUA_Achr11P... | Banana | nucleus | 26.72 | 39.55 |
| CDY36107 | Canola | nucleus | 33.21 | 38.84 |
| KRH15645 | Soybean | nucleus | 37.4 | 38.43 |
| CDY24404 | Canola | nucleus | 32.82 | 38.39 |
| GSMUA_Achr6P09740_001 | Banana | nucleus | 33.59 | 38.26 |
| KRH05373 | Soybean | nucleus | 35.5 | 35.91 |
| GSMUA_Achr9P00560_001 | Banana | nucleus | 33.21 | 34.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.59 | 32.47 |
| CDY30890 | Canola | mitochondrion | 14.5 | 19.59 |
| CDY42693 | Canola | nucleus | 20.61 | 19.29 |
| CDY24785 | Canola | nucleus | 20.99 | 18.33 |
| CDY29225 | Canola | nucleus | 23.28 | 17.63 |
| CDY53074 | Canola | nucleus | 21.37 | 16.72 |
| CDY30317 | Canola | nucleus | 20.23 | 16.01 |
| CDY25162 | Canola | nucleus | 20.23 | 15.73 |
| CDY46300 | Canola | nucleus | 20.23 | 15.73 |
| CDY51216 | Canola | nucleus | 19.08 | 15.06 |
| CDY20923 | Canola | nucleus | 19.08 | 14.66 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078C8B7 | EnsemblPlants:CDX73020 | ProteinID:CDX73020 |
| ProteinID:CDX73020.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00103461001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF296 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEB15D | InterPro:bHLH_dom | SEG:seg |
Description
BnaC06g34680D
Coordinates
chrLK031797:+:1689045..1690643
Molecular Weight (calculated)
29407.5 Da
IEP (calculated)
7.808
GRAVY (calculated)
-0.706
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLDSLLFHHH QHQQLPDHFP GKSPENNFHQ GVFIPSNIHN KNDDSSLDSK KRKTLMASMS
101: TSENSVSDQT SSAQVSINGN VLTKNNSSRR GKRLKNIEDK KEREVVHVRA KRGQATDSHS LAERVRRGKI NERLKCLQDI VPGCYKAMGM ATMLDEIINY
201: VQSLQNQVEF LSMKLTAASS YYDFNSEADA VDSMQKAKAR EAVEMGQGRD GNTVFHSSSW TL
101: TSENSVSDQT SSAQVSINGN VLTKNNSSRR GKRLKNIEDK KEREVVHVRA KRGQATDSHS LAERVRRGKI NERLKCLQDI VPGCYKAMGM ATMLDEIINY
201: VQSLQNQVEF LSMKLTAASS YYDFNSEADA VDSMQKAKAR EAVEMGQGRD GNTVFHSSSW TL
001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L
Arabidopsis Description
BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.