Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119390.2.1 | Tomato | nucleus | 68.48 | 70.0 |
| PGSC0003DMT400013766 | Potato | nucleus | 50.72 | 51.47 |
| CDX82053 | Canola | cytosol | 21.38 | 50.43 |
| KRH48495 | Soybean | nucleus | 49.28 | 50.0 |
| KRH39174 | Soybean | nucleus | 49.28 | 49.82 |
| VIT_17s0000g03580.t01 | Wine grape | nucleus | 47.46 | 49.43 |
| KRH60345 | Soybean | nucleus | 43.84 | 49.19 |
| CDY45873 | Canola | nucleus | 35.14 | 48.74 |
| KRH41647 | Soybean | nucleus | 42.39 | 46.43 |
| Bra025910.1-P | Field mustard | nucleus | 41.67 | 46.37 |
| AT1G73830.1 | Thale cress | nucleus | 43.48 | 45.98 |
| GSMUA_Achr10P... | Banana | nucleus | 31.88 | 45.6 |
| KRH15645 | Soybean | nucleus | 41.3 | 44.71 |
| CDX73020 | Canola | nucleus | 42.39 | 44.66 |
| CDY65027 | Canola | nucleus | 42.39 | 44.49 |
| CDY26165 | Canola | nucleus | 42.39 | 44.49 |
| AT1G18400.1 | Thale cress | nucleus | 41.67 | 44.23 |
| CDY67050 | Canola | nucleus | 41.67 | 43.89 |
| Bra015960.1-P | Field mustard | nucleus | 41.67 | 43.89 |
| KRH05373 | Soybean | nucleus | 39.86 | 42.47 |
| GSMUA_Achr11P... | Banana | nucleus | 27.17 | 42.37 |
| CDY47737 | Canola | nucleus | 37.68 | 39.69 |
| Bra008113.1-P | Field mustard | nucleus | 37.68 | 39.69 |
| GSMUA_Achr1P21010_001 | Banana | nucleus | 35.87 | 37.08 |
| GSMUA_Achr6P09740_001 | Banana | nucleus | 30.8 | 36.96 |
| GSMUA_Achr9P00560_001 | Banana | nucleus | 31.16 | 33.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.99 | 29.52 |
| Zm00001d019127_P001 | Maize | plastid | 16.3 | 14.71 |
Protein Annotations
| EntrezGene:102591506 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1A4N3 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400005725 | PGSC:PGSC0003DMG400005725 | EnsemblPlants:PGSC0003DMT400014656 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF296 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296297B | RefSeq:XP_006341598.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005725]
Coordinates
chr3:+:58813161..58814826
Molecular Weight (calculated)
31125.6 Da
IEP (calculated)
5.827
GRAVY (calculated)
-0.685
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHQFNSDI QNFITNSPFS LLNFDSSIDL MNQFPDMMNI PCSSDMSSFN IQSSMEFSND NVFTQVADQF PGSLQEIFQG NIQQESKTEE INDSKKRKIS
101: DTPESSSAYS SPAASATGNK RRNTKGRGNR VKSDEKEEEK PREVVHVRAK RGQATDSHSL AERVRRGKIN ERLRCLQDIV PGCYKTMGMA GMLDEIINYV
201: QSLQNQVDFL SMKLTAASSY YDFNSESDIL VSLQRAKAYE ALKMQKMMKK EIGCEVMSSN QVGPNFGSYP MLPYNT
101: DTPESSSAYS SPAASATGNK RRNTKGRGNR VKSDEKEEEK PREVVHVRAK RGQATDSHSL AERVRRGKIN ERLRCLQDIV PGCYKTMGMA GMLDEIINYV
201: QSLQNQVDFL SMKLTAASSY YDFNSESDIL VSLQRAKAYE ALKMQKMMKK EIGCEVMSSN QVGPNFGSYP MLPYNT
001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L
Arabidopsis Description
BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.