Factsheet for VIT_17s0000g03580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39174	Soybean	nucleus	52.83	51.28
CDX82053	Canola	cytosol	22.64	51.28
KRH48495	Soybean	nucleus	51.7	50.37
KRH60345	Soybean	nucleus	46.42	50.0
KRH41647	Soybean	nucleus	47.17	49.6
PGSC0003DMT400014656	Potato	nucleus	49.43	47.46
GSMUA_Achr11P...	Banana	nucleus	31.7	47.46
CDY45873	Canola	nucleus	35.47	47.24
GSMUA_Achr10P...	Banana	nucleus	33.58	46.11
KRH15645	Soybean	nucleus	44.15	45.88
AT1G73830.1	Thale cress	nucleus	44.91	45.59
Solyc03g119390.2.1	Tomato	nucleus	46.42	45.56
Solyc12g036470.1.1	Tomato	nucleus	46.42	45.22
PGSC0003DMT400013766	Potato	nucleus	46.42	45.22
KRH05373	Soybean	nucleus	43.02	44.02
Bra025910.1-P	Field mustard	nucleus	41.13	43.95
CDX73020	Canola	nucleus	43.4	43.89
CDY67050	Canola	nucleus	42.64	43.13
Bra015960.1-P	Field mustard	nucleus	42.64	43.13
AT1G18400.1	Thale cress	nucleus	41.51	42.31
CDY65027	Canola	nucleus	41.51	41.83
CDY26165	Canola	nucleus	41.51	41.83
VIT_01s0011g03720.t01	Wine grape	nucleus	40.38	41.47
VIT_14s0006g02850.t01	Wine grape	nucleus	37.74	40.16
GSMUA_Achr6P09740_001	Banana	nucleus	34.34	39.57
GSMUA_Achr1P21010_001	Banana	nucleus	39.62	39.33
CDY47737	Canola	nucleus	38.11	38.55
Bra008113.1-P	Field mustard	nucleus	38.11	38.55
GSMUA_Achr9P00560_001	Banana	nucleus	33.58	35.18
GSMUA_AchrUn_...	Banana	nucleus	32.83	32.1
Zm00001d019127_P001	Maize	plastid	17.74	15.36

Protein Annotations

EntrezGene:100247374	wikigene:100247374	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ProteinID:CBI15462
ProteinID:CBI15462.3	UniProt:D7SJ01	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100247374	wikigene:LOC100247374
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0001984F40	ArrayExpress:VIT_17s0000g03580	EnsemblPlantsGene:VIT_17s0000g03580	EnsemblPlants:VIT_17s0000g03580.t01	RefSeq:XP_002276500	RefSeq:XP_002276500.1
InterPro:bHLH_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:3477176..3478617

Molecular Weight (calculated)

29355.3 Da

IEP (calculated)

6.147

GRAVY (calculated)

-0.694

Length

265 amino acids

Sequence
(BLAST)

001: MADFTADLQG FKTSSYPLFE ADPNTGLIST QSTEQNQGFF DNPSLNFQAL ETFFSQQPPE FPGNLSEIFQ QKVAVPMAQA EVSAGDSLCE NKKRKARVDA
101: SESSSGNSST PACESGLKRG KNSSGRGKRA MKSIEKEDEK PREVVHVRAR RGQATDSHSL AERVRRGKIN ERLRCLQDIV PGCYKTMGMA VMLDEIINYV
201: QSLQNQVEFL SMKLTAASQY YDFNSDTDTL ETIQRGKVHG EQPPSTQHGP IDLTFGSYSS LPYNT

Best Arabidopsis Sequence Match ( AT1G73830.1 )
(BLAST)

001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L

Arabidopsis Description

BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.