Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 59.32 | 38.75 |
| CDX82053 | Canola | cytosol | 24.86 | 37.61 |
| GSMUA_Achr1P21010_001 | Banana | nucleus | 55.37 | 36.7 |
| GSMUA_Achr10P... | Banana | nucleus | 38.42 | 35.23 |
| CDY45873 | Canola | nucleus | 37.29 | 33.17 |
| KRH60345 | Soybean | nucleus | 45.2 | 32.52 |
| VIT_01s0011g03720.t01 | Wine grape | nucleus | 46.33 | 31.78 |
| KRH41647 | Soybean | nucleus | 45.2 | 31.75 |
| VIT_17s0000g03580.t01 | Wine grape | nucleus | 47.46 | 31.7 |
| CDY36107 | Canola | nucleus | 39.55 | 31.25 |
| AT1G25330.1 | Thale cress | nucleus | 38.98 | 30.94 |
| CDY24404 | Canola | nucleus | 38.98 | 30.8 |
| Bra010993.1-P | Field mustard | nucleus | 38.98 | 30.8 |
| GSMUA_Achr9P00560_001 | Banana | nucleus | 42.94 | 30.04 |
| GSMUA_Achr6P09740_001 | Banana | nucleus | 38.98 | 30.0 |
| Bra025910.1-P | Field mustard | nucleus | 41.81 | 29.84 |
| KRH15645 | Soybean | nucleus | 42.94 | 29.8 |
| KRH48495 | Soybean | nucleus | 45.76 | 29.78 |
| KRH39174 | Soybean | nucleus | 45.76 | 29.67 |
| KRH05373 | Soybean | nucleus | 42.94 | 29.34 |
| AT1G18400.1 | Thale cress | nucleus | 42.37 | 28.85 |
| Solyc03g119390.2.1 | Tomato | nucleus | 42.94 | 28.15 |
| CDY65027 | Canola | nucleus | 41.81 | 28.14 |
| CDY26165 | Canola | nucleus | 41.81 | 28.14 |
| GSMUA_Achr10P... | Banana | nucleus | 39.55 | 28.0 |
| AT1G73830.1 | Thale cress | nucleus | 40.68 | 27.59 |
| PGSC0003DMT400014656 | Potato | nucleus | 42.37 | 27.17 |
| CDX73020 | Canola | nucleus | 39.55 | 26.72 |
| Bra008113.1-P | Field mustard | nucleus | 39.55 | 26.72 |
| CDY47737 | Canola | nucleus | 39.55 | 26.72 |
| Bra015960.1-P | Field mustard | nucleus | 39.55 | 26.72 |
| CDY67050 | Canola | nucleus | 39.55 | 26.72 |
| PGSC0003DMT400013766 | Potato | nucleus | 40.68 | 26.47 |
| Solyc12g036470.1.1 | Tomato | nucleus | 40.68 | 26.47 |
| Solyc04g007300.2.1 | Tomato | nucleus, plastid | 42.94 | 25.68 |
| GSMUA_Achr5P23700_001 | Banana | nucleus | 26.55 | 18.43 |
| Zm00001d019127_P001 | Maize | plastid | 18.08 | 10.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P13210_001 | EnsemblPlants:GSMUA_Achr11T13210_001 | EnsemblPlantsGene:GSMUA_Achr11G13210_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF296 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002953263 | UniProt:M0RRV1 | MapMan:15.5.32 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G13210_001]
Coordinates
chr11:+:13324200..13325597
Molecular Weight (calculated)
19629.5 Da
IEP (calculated)
7.130
GRAVY (calculated)
-0.548
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEFAQGLDC LLPSFLSMDA DPSLELMSQL AELNGSAMEN PSMGFQGGKS NSKQVEKPEE VVHVRARRGE ATDSHSLAER ERRKKINERM RRLQNQIPGC
101: HKTMGMARML DQTISYVRSL QNQFLSMELS AASYLSDFGL GVDAIATAQA EKAHEGGEAG RLLRKRHGDC NGFHMPF
101: HKTMGMARML DQTISYVRSL QNQFLSMELS AASYLSDFGL GVDAIATAQA EKAHEGGEAG RLLRKRHGDC NGFHMPF
001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L
Arabidopsis Description
BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.