CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73020
CDX78886
CDX82053
CDX99437
CDY24404
CDY26165
CDY34051
CDY36107
CDY45873
CDY47737
CDY62551
CDY64921
CDY65027
CDY67050
CDY69647
CDY70859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25330.1	CDY26165	AT1G18400.1	21336258
AT1G25330.1	CDY65027	AT1G18400.1	21336258
AT1G25330.1	CDY24404	AT1G25330.1	21336258
AT1G25330.1	CDY36107	AT1G25330.1	21336258
AT1G25330.1	CDX73020	AT1G73830.1	21336258
AT1G25330.1	CDX82053	AT1G73830.1	21336258
AT1G25330.1	CDY45873	AT1G73830.1	21336258
AT1G25330.1	CDY47737	AT1G73830.1	21336258
AT1G25330.1	CDY67050	AT1G73830.1	21336258
AT1G25330.1	CDX78886	AT4G18710.1	21336258
AT1G25330.1	CDX99437	AT4G18710.1	21336258
AT1G25330.1	CDY34051	AT4G18710.1	21336258
AT1G25330.1	CDY62551	AT4G18710.1	21336258
AT1G25330.1	CDY64921	AT4G18710.1	21336258
AT1G25330.1	CDY69647	AT4G18710.1	21336258
AT1G25330.1	CDY70859	AT4G18710.1	21336258

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24404	Canola	nucleus	94.64	94.64
Bra010993.1-P	Field mustard	nucleus	90.62	90.62
AT1G25330.1	Thale cress	nucleus	77.23	77.58
CDX82053	Canola	cytosol	22.32	42.73
CDY45873	Canola	nucleus	36.16	40.7
GSMUA_Achr10P...	Banana	nucleus	34.38	39.9
GSMUA_Achr11P...	Banana	nucleus	31.25	39.55
VIT_01s0011g03720.t01	Wine grape	nucleus	43.3	37.6
CDY26165	Canola	nucleus	39.29	33.46
CDX73020	Canola	nucleus	38.84	33.21
CDY65027	Canola	nucleus	38.84	33.08
CDY47737	Canola	nucleus	38.39	32.82
CDY67050	Canola	nucleus	38.39	32.82
GSMUA_Achr6P09740_001	Banana	nucleus	33.48	32.61
GSMUA_Achr1P21010_001	Banana	nucleus	38.84	32.58
Solyc04g007300.2.1	Tomato	nucleus, plastid	42.41	32.09
GSMUA_AchrUn_...	Banana	nucleus	36.61	30.26
GSMUA_Achr9P00560_001	Banana	nucleus	33.04	29.25
CDY42693	Canola	nucleus	21.43	17.14
CDY24785	Canola	nucleus	22.77	17.0
CDY30890	Canola	mitochondrion	13.39	15.46
CDY30317	Canola	nucleus	22.77	15.41
CDY20923	Canola	nucleus	21.88	14.37
CDY53074	Canola	nucleus	21.43	14.33
CDY46300	Canola	nucleus	21.43	14.24
CDY25162	Canola	nucleus	21.43	14.24
CDY51216	Canola	nucleus	20.98	14.16
CDY29225	Canola	nucleus	21.43	13.87

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078HE87	UniProt:A0A078HE87	EnsemblPlants:CDY36107
ProteinID:CDY36107	ProteinID:CDY36107.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00059946001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF128	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE62C6	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA08g19410DBnaA08g19410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE87]

Coordinates

chrLK032367:-:149162..151128

Molecular Weight (calculated)

25546.1 Da

IEP (calculated)

5.389

GRAVY (calculated)

-0.705

Length

224 amino acids

Sequence
(BLAST)

001: MARYEPYNYN IGLNPSLPHI NQNQELINLD LPVSATPSSF MLFSNGDLVD ARHNNSHFSP NLLHGDFGRQ DKKEESGSKR KRKRSEEEES INEDDIEKPR
101: DVVHVRAKRG QATDSHSLAE RVRREKINER LKCLQDLVPG CYKTMGMAVM LEVIIDYVRS LQNQIEFLSM KLSAASAYYD LNSLDIEPTD TFQGGNMYSA
201: EEMERILREG VGTQTPNFSS TLPF

Best Arabidopsis Sequence Match ( AT1G25330.1 )
(BLAST)

001: MARFEPYNYN NGHDPFFAHI NQNPELINLD LPASTPSSFM LFSNGALVDA NHNNSHFFPN LLHGNTRRKG NKEESGSKRR RKRSEEEEAM NGDETQKPKD
101: VVHVRAKRGQ ATDSHSLAER VRREKINERL KCLQDLVPGC YKAMGMAVML DVIIDYVRSL QNQIEFLSMK LSAASACYDL NSLDIEPTDI FQGGNIHSAA
201: EMERILRESV GTQPPNFSST LPF

Arabidopsis Description

BHLH75Transcription factor bHLH75 [Source:UniProtKB/Swiss-Prot;Acc:A4D998]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.