CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20923
CDY25162
CDY29225
CDY30317
CDY46300
CDY51216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	CDY20923	AT2G18300.3	23221598
AT2G18300.3	CDY25162	AT2G18300.3	23221598
AT2G18300.3	CDY29225	AT2G18300.3	23221598
AT2G18300.3	CDY30317	AT2G18300.3	23221598
AT2G18300.3	CDY46300	AT2G18300.3	23221598
AT2G18300.3	CDY51216	AT2G18300.3	23221598

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46300	Canola	nucleus	100.0	100.0
Bra039618.1-P	Field mustard	nucleus	94.96	94.96
CDY20923	Canola	nucleus	71.51	70.67
CDY30317	Canola	nucleus	69.14	70.39
CDY29225	Canola	nucleus	72.11	70.23
CDY51216	Canola	nucleus	66.77	67.77
AT2G18300.3	Thale cress	nucleus	54.9	50.82
CDY24785	Canola	nucleus	42.14	47.33
CDY53074	Canola	nucleus	42.43	42.69
HORVU7Hr1G043560.1	Barley	nucleus	11.57	39.8
CDY42693	Canola	nucleus	30.86	37.14
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	12.76	34.13
HORVU6Hr1G016250.1	Barley	nucleus	9.2	33.7
CDX82053	Canola	cytosol	11.57	33.33
CDY45873	Canola	nucleus	15.13	25.63
CDY30890	Canola	mitochondrion	13.65	23.71
CDY36107	Canola	nucleus	14.24	21.43
CDY47737	Canola	nucleus	16.02	20.61
CDY67050	Canola	nucleus	16.02	20.61
CDY24404	Canola	nucleus	13.65	20.54
CDY65027	Canola	nucleus	16.02	20.53
CDX73020	Canola	nucleus	15.73	20.23
CDY26165	Canola	nucleus	15.73	20.15
HORVU6Hr1G037110.1	Barley	plastid	14.24	15.53
HORVU3Hr1G066050.1	Barley	nucleus	13.06	12.32

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078GJ03	UniProt:A0A078GJ03	EnsemblPlants:CDY25162
ProteinID:CDY25162	ProteinID:CDY25162.1	ProteinID:CDY46300.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00029080001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE9C33
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC07g03450DBnaA07g02010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ03]

Coordinates

chrLK032169:-:541390..543411

Molecular Weight (calculated)

37822.9 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.552

Length

337 amino acids

Sequence
(BLAST)

001: MLESLVSLES MSLSSMDVSV LERLKWLQQQ QQQVLSTTNA SPELLQFHGT NNDELLQNTF SHFQMLRSGF GPNYSMGFGP SHEAMDGCIS RTNSCQMDQA
101: DTVGVMLKNS EENITISLKN KRKSEVKTRE EEKTEKKIKV EAETESNMKV KSNLSNTEAS SETSKQKSKA ASETQKLDYI HVRARRGQAT DRHSLAERAR
201: REKISKKMKY LQDLVPGCNK VTGRAGMLDE IINYVQSLQR QVEFLSMKLA VLNPELELAM EDLSVKQFQA YFTNLPVVVA SKPSLMVDAP LFPLDQQGSL
301: DLSVINPNQA TTIEAPSASW ETQSQSLYNT SSLGFQY

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.