Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G043560.1 | Barley | nucleus | 21.68 | 68.37 |
| HORVU3Hr1G030720.2 | Barley | cytosol, nucleus, vacuole | 25.89 | 63.49 |
| HORVU6Hr1G016250.1 | Barley | nucleus | 13.27 | 44.57 |
| HORVU3Hr1G066050.1 | Barley | nucleus | 20.71 | 17.93 |
| CDY42693 | Canola | nucleus | 14.56 | 16.07 |
| Bra010558.1-P | Field mustard | nucleus | 14.56 | 15.0 |
| CDY46300 | Canola | nucleus | 15.53 | 14.24 |
| CDY25162 | Canola | nucleus | 15.53 | 14.24 |
| CDY53074 | Canola | nucleus | 15.21 | 14.03 |
| CDY30317 | Canola | nucleus | 14.89 | 13.9 |
| CDY24785 | Canola | nucleus | 13.27 | 13.67 |
| Bra039618.1-P | Field mustard | nucleus | 14.89 | 13.65 |
| Bra017765.1-P | Field mustard | cytosol, extracellular, nucleus, plastid | 11.65 | 13.43 |
| Bra037226.1-P | Field mustard | nucleus | 13.59 | 12.69 |
| CDY20923 | Canola | nucleus | 13.92 | 12.61 |
| AT4G36540.1 | Thale cress | nucleus | 12.3 | 12.5 |
| CDY29225 | Canola | nucleus | 13.92 | 12.43 |
| AT2G18300.3 | Thale cress | nucleus | 14.56 | 12.36 |
| CDY51216 | Canola | nucleus | 12.95 | 12.05 |
| Bra024474.1-P | Field mustard | nucleus | 12.62 | 11.64 |
| Zm00001d019127_P001 | Maize | plastid | 5.5 | 5.56 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G037110.1 | EnsemblPlantsGene:HORVU6Hr1G037110 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF182 | SEG:seg | UniParc:UPI000B46A1B4 |
| UniProt:A0A287TY24 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:185538732..185542883
Molecular Weight (calculated)
32675.4 Da
IEP (calculated)
11.231
GRAVY (calculated)
-0.487
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: TEQALSRPHP PSPVMNHHRR QGLHAPLLLV LSQLLGAQGL LLDRPRRRPP VRRAAAAAGR RSGRVGRPVP LVLLFSSAPP SVGRPGRWTT TTSLACSRAP
101: RGSTSACRAS TPASSRRSAA SAARAPPGSP PCSGTGRPGC TASETVLPEG DAGIWFADGE ATGPDLKKCK IEDETVRPKV EVEAAAASDG SAGGERGRKQ
201: AKGKGSKSKQ PAADKPPRDY VHVRARRGQA TDCHSLVRRE KITLKMKMLQ TSVLALRDKK LKGHLAGKEK LIGISAKAAA QCDMGLSGVL PKEQYTTGPF
301: EISCLVFTY
101: RGSTSACRAS TPASSRRSAA SAARAPPGSP PCSGTGRPGC TASETVLPEG DAGIWFADGE ATGPDLKKCK IEDETVRPKV EVEAAAASDG SAGGERGRKQ
201: AKGKGSKSKQ PAADKPPRDY VHVRARRGQA TDCHSLVRRE KITLKMKMLQ TSVLALRDKK LKGHLAGKEK LIGISAKAAA QCDMGLSGVL PKEQYTTGPF
301: EISCLVFTY
001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQVFHFFL
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQVFHFFL
Arabidopsis Description
BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.