CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83516
CDY02864
CDY14860
CDY20923
CDY22263
CDY25162
CDY29225
CDY30317
CDY30379
CDY42818
CDY46300
CDY50830
CDY51216
CDY53659
CDY55504
CDY56346
CDY68147

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36540.1	CDY20923	AT2G18300.3	23221598
AT4G36540.1	CDY25162	AT2G18300.3	23221598
AT4G36540.1	CDY29225	AT2G18300.3	23221598
AT4G36540.1	CDY30317	AT2G18300.3	23221598
AT4G36540.1	CDY46300	AT2G18300.3	23221598
AT4G36540.1	CDY51216	AT2G18300.3	23221598
AT4G36540.1	CDX83516	AT2G42870.1	21798944
AT4G36540.1	CDY14860	AT2G42870.1	21798944
AT4G36540.1	CDY42818	AT2G42870.1	21798944
AT4G36540.1	CDY50830	AT2G42870.1	21798944
AT4G36540.1	CDY68147	AT2G42870.1	21798944
AT4G36540.1	CDY30379	AT2G43060.1	21798944
AT4G36540.1	CDY53659	AT2G43060.1	21798944
AT4G36540.1	CDY55504	AT2G43060.1	21798944
AT4G36540.1	CDY56346	AT2G43060.1	21798944
AT4G36540.1	CDY02864	AT5G59210.1	21798944
AT4G36540.1	CDY22263	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24785	Canola	nucleus	67.86	63.33
AT4G36540.1	Thale cress	nucleus	53.93	49.67
CDY53074	Canola	nucleus	55.36	46.27
CDX82053	Canola	cytosol	16.07	38.46
HORVU7Hr1G043560.1	Barley	nucleus	11.79	33.67
HORVU6Hr1G016250.1	Barley	nucleus	10.71	32.61
CDY20923	Canola	nucleus	38.57	31.67
CDY51216	Canola	nucleus	37.14	31.33
CDY29225	Canola	nucleus	38.57	31.21
CDY30317	Canola	nucleus	36.79	31.12
CDY25162	Canola	nucleus	37.14	30.86
CDY46300	Canola	nucleus	37.14	30.86
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	13.57	30.16
CDY30890	Canola	mitochondrion	17.5	25.26
CDY45873	Canola	nucleus	16.43	23.12
CDY36107	Canola	nucleus	17.14	21.43
CDY24404	Canola	nucleus	16.79	20.98
CDY65027	Canola	nucleus	19.64	20.91
CDY26165	Canola	nucleus	19.64	20.91
CDY67050	Canola	nucleus	19.29	20.61
CDX73020	Canola	nucleus	19.29	20.61
CDY47737	Canola	nucleus	18.93	20.23
HORVU6Hr1G037110.1	Barley	plastid	16.07	14.56
HORVU3Hr1G066050.1	Barley	nucleus	18.21	14.29

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078I0S8	UniProt:A0A078I0S8	EnsemblPlants:CDY42693
ProteinID:CDY42693	ProteinID:CDY42693.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00075217001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE1A9A	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA03g53460DBnaA03g53460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0S8]

Coordinates

chrLK032532:+:1579..2829

Molecular Weight (calculated)

32237.2 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.778

Length

280 amino acids

Sequence
(BLAST)

001: MDLTGLKWLQ QHQQMVSPEF LQILGSDGRE ELRRVESYLG NNLDELQNFR PGYDTIDGCI SRTSSFQMEP VKSNEENRVV ALQNKRKPEG KRETREKKKK
101: IKAEDETESS MKGNSDMSNT ETSSDVLKQD YIHVRARRGE ATDRHSLAER ARREKISKKM KCLQDIVPGC NKVTGKAGML DEIINYVQSL QQQVEFLSMK
201: LSFLNPQLEF HIHELSSMMA DQRSFPLHQQ GSLDYSVINS NQTTSLNALK METSLSWDVH SQCLYNNLRT DSVFSFFSLK

Best Arabidopsis Sequence Match ( AT4G36540.2 )
(BLAST)

001: MDLSVLDRLK WLQQQQMVSP EFLQILGSDG REELKRVESY LGNNNDELQS FRHFPEFGPD YDTTDGCISR TSSFHMEPVK NNGHSRAITL QNKRKPEGKT
101: EKREKKKIKA EDETEPSMKG KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV TGKAGMLDEI INYVQSLQQQ
201: VEFLSMKLSV INPELECHID DLSAKQAYFT GPPEGDSKQS IMADFRSFPL HQQGSLDYSV INSDHTTSLG AKDHTSSSWE THSQCLYNSL RTDSVSNFFS
301: LK

Arabidopsis Description

BEE2Transcription factor BEE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VJ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.