Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025910.1-P | Field mustard | nucleus | 92.4 | 97.98 |
| CDY26165 | Canola | nucleus | 97.72 | 97.72 |
| AT1G18400.1 | Thale cress | nucleus | 68.44 | 69.23 |
| CDY45873 | Canola | nucleus | 44.49 | 58.79 |
| CDY67050 | Canola | nucleus | 56.27 | 56.49 |
| CDX73020 | Canola | nucleus | 55.89 | 56.11 |
| CDX82053 | Canola | cytosol | 23.95 | 53.85 |
| CDY47737 | Canola | nucleus | 50.95 | 51.15 |
| GSMUA_Achr10P... | Banana | nucleus | 33.08 | 45.08 |
| KRH41647 | Soybean | nucleus | 42.97 | 44.84 |
| KRH60345 | Soybean | nucleus | 40.68 | 43.5 |
| Solyc12g036470.1.1 | Tomato | nucleus | 44.49 | 43.01 |
| Solyc03g119390.2.1 | Tomato | nucleus | 44.11 | 42.96 |
| KRH48495 | Soybean | nucleus | 44.11 | 42.65 |
| KRH39174 | Soybean | nucleus | 44.11 | 42.49 |
| PGSC0003DMT400014656 | Potato | nucleus | 44.49 | 42.39 |
| GSMUA_Achr11P... | Banana | nucleus | 28.14 | 41.81 |
| PGSC0003DMT400013766 | Potato | nucleus | 42.97 | 41.54 |
| VIT_17s0000g03580.t01 | Wine grape | nucleus | 41.83 | 41.51 |
| KRH15645 | Soybean | nucleus | 39.92 | 41.18 |
| KRH05373 | Soybean | nucleus | 39.16 | 39.77 |
| CDY36107 | Canola | nucleus | 33.08 | 38.84 |
| GSMUA_Achr1P21010_001 | Banana | nucleus | 39.16 | 38.58 |
| CDY24404 | Canola | nucleus | 31.94 | 37.5 |
| GSMUA_Achr6P09740_001 | Banana | nucleus | 32.32 | 36.96 |
| GSMUA_Achr9P00560_001 | Banana | nucleus | 33.08 | 34.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.18 | 30.26 |
| CDY42693 | Canola | nucleus | 20.91 | 19.64 |
| CDY24785 | Canola | nucleus | 21.67 | 19.0 |
| CDY30890 | Canola | mitochondrion | 13.69 | 18.56 |
| CDY29225 | Canola | nucleus | 22.05 | 16.76 |
| CDY30317 | Canola | nucleus | 20.91 | 16.62 |
| CDY53074 | Canola | nucleus | 20.91 | 16.42 |
| CDY46300 | Canola | nucleus | 20.53 | 16.02 |
| CDY25162 | Canola | nucleus | 20.53 | 16.02 |
| CDY51216 | Canola | nucleus | 19.77 | 15.66 |
| CDY20923 | Canola | nucleus | 18.63 | 14.37 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078JHZ0 | UniProt:A0A078JHZ0 | EnsemblPlants:CDY65027 |
| ProteinID:CDY65027 | ProteinID:CDY65027.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00044041001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF296 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE102E | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g50040DBnaC05g50040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHZ0]
Coordinates
chrLK034631:-:7924..9470
Molecular Weight (calculated)
29806.9 Da
IEP (calculated)
8.117
GRAVY (calculated)
-0.748
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MANFENLSSE LQTIAMDIYS SMTQAADLNN NNNISSNLQF QTFPPFSTSL NSLFLHHRHP QQLHDLPGKY PGSDNNLSAT STLYHSSHNN VDETKKRKAL
101: LQPLSSSENS SVSDQLNINT TETGCSRRWK RLKKKNQEEE KEREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLQDI VPGCYKSMGM ATMLDEIINY
201: VQSLQNQVEL LSMKLTAASS FYDFNSETDA VDSMQRAKAR EAVEMGRQTR DGNPVLHLSA WSL
101: LQPLSSSENS SVSDQLNINT TETGCSRRWK RLKKKNQEEE KEREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLQDI VPGCYKSMGM ATMLDEIINY
201: VQSLQNQVEL LSMKLTAASS FYDFNSETDA VDSMQRAKAR EAVEMGRQTR DGNPVLHLSA WSL
001: MANFENLSSD FQTIAMDIYS SITQAADLNN NNSNLHFQTF HPSSTSLESL FLHHHQQQLL HFPGNSPDSS NNFSSTSSFL HSDHNIVDET KKRKALLPTL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQRAKARETV EMGRQTRDGS PVFHLSTWSL
101: SSSETSGVSD NTNVIATETG SLRRGKRLKK KKEEEDEKER EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDMVPG CYKAMGMATM LDEIINYVQS
201: LQNQVEFLSM KLTAASSFYD FNSETDAVDS MQRAKARETV EMGRQTRDGS PVFHLSTWSL
Arabidopsis Description
BEE1Transcription factor BEE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ13]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.