Factsheet for PGSC0003DMT400013766

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g036470.1.1	Tomato	nucleus	82.35	82.35
PGSC0003DMT400014656	Potato	nucleus	51.47	50.72
CDY45873	Canola	nucleus	36.4	49.75
CDX82053	Canola	cytosol	21.32	49.57
VIT_17s0000g03580.t01	Wine grape	nucleus	45.22	46.42
KRH60345	Soybean	nucleus	41.91	46.34
Bra025910.1-P	Field mustard	nucleus	41.18	45.16
GSMUA_Achr10P...	Banana	nucleus	31.99	45.08
KRH48495	Soybean	nucleus	44.85	44.85
KRH41647	Soybean	nucleus	41.54	44.84
KRH39174	Soybean	nucleus	44.85	44.69
AT1G73830.1	Thale cress	nucleus	42.28	44.06
CDY67050	Canola	nucleus	41.91	43.51
Bra015960.1-P	Field mustard	nucleus	41.91	43.51
CDY26165	Canola	nucleus	41.91	43.35
CDX73020	Canola	nucleus	41.54	43.13
CDY65027	Canola	nucleus	41.54	42.97
AT1G18400.1	Thale cress	nucleus	40.44	42.31
CDY47737	Canola	nucleus	40.44	41.98
Bra008113.1-P	Field mustard	nucleus	40.44	41.98
GSMUA_Achr11P...	Banana	nucleus	26.47	40.68
KRH15645	Soybean	nucleus	37.5	40.0
KRH05373	Soybean	nucleus	35.29	37.07
GSMUA_Achr1P21010_001	Banana	nucleus	35.66	36.33
GSMUA_Achr6P09740_001	Banana	nucleus	30.51	36.09
GSMUA_Achr9P00560_001	Banana	nucleus	31.62	33.99
GSMUA_AchrUn_...	Banana	nucleus	29.41	29.52
Zm00001d019127_P001	Maize	plastid	18.01	16.01

Protein Annotations

EntrezGene:102581324	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1A3B8
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400005388	PGSC:PGSC0003DMG400005388	EnsemblPlants:PGSC0003DMT400013766	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF296	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295178A	RefSeq:XP_006353818.2	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Basic helix-loop-helix protein BHLH5 [Source:PGSC_GENE;Acc:PGSC0003DMG400005388]

Coordinates

chr12:+:40688227..40690621

Molecular Weight (calculated)

31225.9 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.678

Length

272 amino acids

Sequence
(BLAST)

001: MAFHYFNPDM QIIIPQFSLL NTDTNLNFHN QFPEQNYLNT TSLEMSNFNF HKHSDEHIFN QIPEFPIGLI ENFQQDMFNL SVPARNDINE SKKRKTIETP
101: ESSSAYSSPA VSSRRKTSKG RGKRVKSDDN EEEKLRQVVH VRAKRGQATD SHSLAERVRR GKINERLGCL QDIVPGCYKS MGMAVMLDEI INYVQSLQNQ
201: VEFLSMKLSA ASTYYDFNSE TDILETMQRA KAYETHMMQK LKKEGCEGVG SNQVAPLIDH TFGCYPKLSY NT

Best Arabidopsis Sequence Match ( AT1G73830.1 )
(BLAST)

001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L

Arabidopsis Description

BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.