CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015960.1-P	Field mustard	nucleus	98.86	98.86
CDX73020	Canola	nucleus	94.66	94.66
AT1G73830.1	Thale cress	nucleus	73.66	73.95
CDY47737	Canola	nucleus	67.56	67.56
CDY45873	Canola	nucleus	50.76	66.83
CDX82053	Canola	cytosol	26.34	58.97
CDY65027	Canola	nucleus	56.49	56.27
CDY26165	Canola	nucleus	56.49	56.27
KRH41647	Soybean	nucleus	44.27	46.03
KRH60345	Soybean	nucleus	43.13	45.94
VIT_17s0000g03580.t01	Wine grape	nucleus	43.13	42.64
GSMUA_Achr10P...	Banana	nucleus	31.3	42.49
PGSC0003DMT400013766	Potato	nucleus	43.51	41.91
Solyc03g119390.2.1	Tomato	nucleus	43.13	41.85
PGSC0003DMT400014656	Potato	nucleus	43.89	41.67
Solyc12g036470.1.1	Tomato	nucleus	42.75	41.18
KRH39174	Soybean	nucleus	41.98	40.29
KRH48495	Soybean	nucleus	41.6	40.07
GSMUA_Achr11P...	Banana	nucleus	26.72	39.55
GSMUA_Achr1P21010_001	Banana	nucleus	40.08	39.33
CDY36107	Canola	nucleus	32.82	38.39
KRH15645	Soybean	nucleus	37.02	38.04
CDY24404	Canola	nucleus	32.44	37.95
GSMUA_Achr6P09740_001	Banana	nucleus	33.21	37.83
KRH05373	Soybean	nucleus	35.5	35.91
GSMUA_Achr9P00560_001	Banana	nucleus	33.59	34.78
GSMUA_AchrUn_...	Banana	nucleus	33.21	32.1
CDY30890	Canola	mitochondrion	14.5	19.59
CDY42693	Canola	nucleus	20.61	19.29
CDY24785	Canola	nucleus	21.37	18.67
CDY29225	Canola	nucleus	24.05	18.21
CDY53074	Canola	nucleus	22.14	17.31
CDY30317	Canola	nucleus	20.61	16.31
CDY25162	Canola	nucleus	20.61	16.02
CDY46300	Canola	nucleus	20.61	16.02
CDY51216	Canola	nucleus	19.47	15.36
CDY20923	Canola	nucleus	19.85	15.25

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078JKT0	UniProt:A0A078JKT0	EnsemblPlants:CDY67050
ProteinID:CDY67050	ProteinID:CDY67050.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00058707001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF296	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EF2F35	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA07g38970DBnaA07g38970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKT0]

Coordinates

chrLK035704:+:8233..9563

Molecular Weight (calculated)

29403.5 Da

IEP (calculated)

8.272

GRAVY (calculated)

-0.702

Length

262 amino acids

Sequence
(BLAST)

001: MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLDSLLFHHH QHQPLPDHFP GRSPQNNFHQ GVFIPSNIHN KNDDSSLDSK KRKTLMASMS
101: TSENSVSDQT SSAQVSINGN VLTKNNSSRR GKRLKNIEDK KEREVVHVRA KRGQATDSHS LAERVRRGKI NERLKCLQDI VPGCYKAMGM ATMLDEIINY
201: VQSLQNQVEF LSMKLTAASS YYDFNSEADA VDSMQKAKAR EAVEMGQGRD GNTVFHSSSW TL

Best Arabidopsis Sequence Match ( AT1G73830.1 )
(BLAST)

001: MANLSSDFQT FTMDDPIRQL AELSNTLHHF QTFPPPFSSS LDSLFFHNQF PDHFPGKSLE NNFHQGIFFP SNIQNNEESS SQFDTKKRKS LMEAVSTSEN
101: SVSDQTLSTS SAQVSINGNI STKNNSSRRG KRSKNREEEK EREVVHVRAR RGQATDSHSI AERVRRGKIN ERLKCLQDIV PGCYKTMGMA TMLDEIINYV
201: QSLQNQVEFL SMKLTAASSY YDFNSETDAV ESMQKAKARE AVEMGQGRDG SSVFHSSSWT L

Arabidopsis Description

BEE3Transcription factor BEE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.