CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83516
CDY02864
CDY14860
CDY20923
CDY22263
CDY25162
CDY29225
CDY30317
CDY30379
CDY42818
CDY46300
CDY50830
CDY51216
CDY53659
CDY55504
CDY56346
CDY68147

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36540.1	CDY20923	AT2G18300.3	23221598
AT4G36540.1	CDY25162	AT2G18300.3	23221598
AT4G36540.1	CDY29225	AT2G18300.3	23221598
AT4G36540.1	CDY30317	AT2G18300.3	23221598
AT4G36540.1	CDY46300	AT2G18300.3	23221598
AT4G36540.1	CDY51216	AT2G18300.3	23221598
AT4G36540.1	CDX83516	AT2G42870.1	21798944
AT4G36540.1	CDY14860	AT2G42870.1	21798944
AT4G36540.1	CDY42818	AT2G42870.1	21798944
AT4G36540.1	CDY50830	AT2G42870.1	21798944
AT4G36540.1	CDY68147	AT2G42870.1	21798944
AT4G36540.1	CDY30379	AT2G43060.1	21798944
AT4G36540.1	CDY53659	AT2G43060.1	21798944
AT4G36540.1	CDY55504	AT2G43060.1	21798944
AT4G36540.1	CDY56346	AT2G43060.1	21798944
AT4G36540.1	CDY02864	AT5G59210.1	21798944
AT4G36540.1	CDY22263	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42693	Canola	nucleus	63.33	67.86
CDY53074	Canola	nucleus	75.0	67.16
AT4G36540.1	Thale cress	nucleus	62.0	61.18
CDY25162	Canola	nucleus	47.33	42.14
CDY46300	Canola	nucleus	47.33	42.14
CDY29225	Canola	nucleus	47.0	40.75
CDY20923	Canola	nucleus	45.67	40.18
CDY30317	Canola	nucleus	44.0	39.88
CDY51216	Canola	nucleus	43.33	39.16
CDX82053	Canola	cytosol	13.33	34.19
HORVU7Hr1G043560.1	Barley	nucleus	10.67	32.65
HORVU6Hr1G016250.1	Barley	nucleus	10.0	32.61
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	12.33	29.37
CDY30890	Canola	mitochondrion	15.67	24.23
CDY45873	Canola	nucleus	15.33	23.12
CDY36107	Canola	nucleus	17.0	22.77
CDY24404	Canola	nucleus	16.67	22.32
CDY65027	Canola	nucleus	19.0	21.67
CDY47737	Canola	nucleus	18.67	21.37
CDY67050	Canola	nucleus	18.67	21.37
CDX73020	Canola	nucleus	18.33	20.99
CDY26165	Canola	nucleus	18.33	20.91
HORVU6Hr1G037110.1	Barley	plastid	13.67	13.27
HORVU3Hr1G066050.1	Barley	nucleus	15.33	12.89

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078GE06	UniProt:A0A078GE06	EnsemblPlants:CDY24785
ProteinID:CDY24785	ProteinID:CDY24785.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00027235001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEEB88
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaA08g15250DBnaA08g15250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE06]

Coordinates

chrLK032164:-:139300..140826

Molecular Weight (calculated)

34638.8 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.856

Length

300 amino acids

Sequence
(BLAST)

001: MDLSVLERVK WLQQQQMVSP EFFEILGLDG REELKRVESY LGNNNDEWQS FRHYETIDGC ISRTSSFQME QVKNNEENRA TALQHKRKIE GKTEKIENKK
101: NKKIKTEDET ESSMKGKSNM SNSETSSEIQ KRDYIHVRAR RGEATDRHSL AERARREKLS KKMKCLQDIV PGCNKVTGKA GMLDEIINYV QSLQQQVEFL
201: SMKLSVLNPE LEYHINELST KQFQACFTDL PEAVSKQSMM VDASSFPLQH QESLDYSVIN SIQTTTLGSK DQTSPAWEIH SQSLYNNLRT DSDSSFFSLK

Best Arabidopsis Sequence Match ( AT4G36540.1 )
(BLAST)

001: MDLSVLDRLK WLQQQQMVSP EFLQILGSDG REELKRVESY LGNNNDELQS FRHFPEFGPD YDTTDGCISR TSSFHMEPVK NNGHSRAITL QNKRKPEGKT
101: EKREKKKIKA EDETEPSMKG KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV TGKAGMLDEI INYVQSLQQQ
201: VEFLSMKLSV INPELECHID DLSAKQFQAY FTGPPEGDSK QSIMADFRSF PLHQQGSLDY SVINSDHTTS LGAKDHTSSS WETHSQCLYN SLRTDSVSNF
301: FSLK

Arabidopsis Description

BEE2Transcription factor BEE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VJ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.