CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20923
CDY25162
CDY29225
CDY30317
CDY46300
CDY51216

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	CDY20923	AT2G18300.3	23221598
AT2G18300.3	CDY25162	AT2G18300.3	23221598
AT2G18300.3	CDY29225	AT2G18300.3	23221598
AT2G18300.3	CDY30317	AT2G18300.3	23221598
AT2G18300.3	CDY46300	AT2G18300.3	23221598
AT2G18300.3	CDY51216	AT2G18300.3	23221598

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29225	Canola	nucleus	81.82	80.64
CDY51216	Canola	nucleus	76.25	78.31
CDY25162	Canola	nucleus	70.67	71.51
CDY46300	Canola	nucleus	70.67	71.51
CDY30317	Canola	nucleus	69.21	71.3
AT2G18300.3	Thale cress	nucleus	57.18	53.57
CDY24785	Canola	nucleus	40.18	45.67
CDY53074	Canola	nucleus	41.64	42.39
HORVU7Hr1G043560.1	Barley	nucleus	11.14	38.78
CDY42693	Canola	nucleus	31.67	38.57
CDX82053	Canola	cytosol	11.73	34.19
HORVU6Hr1G016250.1	Barley	nucleus	8.21	30.43
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	11.14	30.16
CDY45873	Canola	nucleus	13.78	23.62
CDY36107	Canola	nucleus	14.37	21.88
CDY24404	Canola	nucleus	13.78	20.98
CDY30890	Canola	mitochondrion	11.73	20.62
CDY47737	Canola	nucleus	15.54	20.23
CDY67050	Canola	nucleus	15.25	19.85
CDX73020	Canola	nucleus	14.66	19.08
CDY65027	Canola	nucleus	14.37	18.63
CDY26165	Canola	nucleus	13.78	17.87
HORVU6Hr1G037110.1	Barley	plastid	12.61	13.92
HORVU3Hr1G066050.1	Barley	nucleus	12.61	12.04

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	GO:A0A078G8D8	UniProt:A0A078G8D8	EnsemblPlants:CDY20923
ProteinID:CDY20923	ProteinID:CDY20923.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00013286001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EAEF68	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaC06g01430DBnaC06g01430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8D8]

Coordinates

chrLK032114:-:369787..371623

Molecular Weight (calculated)

38435.5 Da

IEP (calculated)

6.189

GRAVY (calculated)

-0.613

Length

341 amino acids

Sequence
(BLAST)

001: MLEGLVSPEN LSLSSMDMNV LERLKWLQQQ QQQVVSRTSD NSPELLQILQ FHGSNNDELL QSTFSHFQML GSGFGPNPNM GFGPSHEAMD GCISRTSSFQ
101: MDPVDTMGVM LKNSEENRTI SSKNKRKSEV KRREEERTEK KIKVEAETES NMKGKSSMSN TEASSDTSKE TSKGASEIHK LDYIHVRSRR SQATDRHSLA
201: ERARREKISK KMKYLQDIVP GCKKVTGQAG MLDEIINYVQ SLQTQIEFLS MKLAFLNPEL ELSVEDLYVK QLQDYFTNLP VVIASKPSIM VDVPLFPLDQ
301: QGSLDLSVIN LSQTTSTEAP SASWETQSRS LYNTSSLGFH Y

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.