Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010558.1-P | Field mustard | nucleus | 82.99 | 92.67 |
| CDY24785 | Canola | nucleus | 67.16 | 75.0 |
| CDY42693 | Canola | nucleus | 46.27 | 55.36 |
| AT4G36540.1 | Thale cress | nucleus | 49.25 | 54.28 |
| CDY29225 | Canola | nucleus | 44.18 | 42.77 |
| CDY46300 | Canola | nucleus | 42.69 | 42.43 |
| CDY25162 | Canola | nucleus | 42.69 | 42.43 |
| Bra017765.1-P | Field mustard | cytosol, extracellular, nucleus, plastid | 33.73 | 42.16 |
| CDY30317 | Canola | nucleus | 41.49 | 41.99 |
| CDY20923 | Canola | nucleus | 42.39 | 41.64 |
| CDY51216 | Canola | nucleus | 41.19 | 41.57 |
| HORVU7Hr1G043560.1 | Barley | nucleus | 10.15 | 34.69 |
| CDX82053 | Canola | cytosol | 11.94 | 34.19 |
| HORVU6Hr1G016250.1 | Barley | nucleus | 9.25 | 33.7 |
| HORVU3Hr1G030720.2 | Barley | cytosol, nucleus, vacuole | 11.94 | 31.75 |
| CDY30890 | Canola | mitochondrion | 14.33 | 24.74 |
| CDY45873 | Canola | nucleus | 13.73 | 23.12 |
| CDY67050 | Canola | nucleus | 17.31 | 22.14 |
| CDY36107 | Canola | nucleus | 14.33 | 21.43 |
| CDY24404 | Canola | nucleus | 14.33 | 21.43 |
| CDX73020 | Canola | nucleus | 16.72 | 21.37 |
| CDY65027 | Canola | nucleus | 16.42 | 20.91 |
| CDY26165 | Canola | nucleus | 16.12 | 20.53 |
| CDY47737 | Canola | nucleus | 15.82 | 20.23 |
| HORVU6Hr1G037110.1 | Barley | plastid | 14.03 | 15.21 |
| HORVU3Hr1G066050.1 | Barley | nucleus | 14.93 | 14.01 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078IUH7 | UniProt:A0A078IUH7 | EnsemblPlants:CDY53074 |
| ProteinID:CDY53074 | ProteinID:CDY53074.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00008502001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EBECDB | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g76640DBnaC03g76640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUH7]
Coordinates
chrLK033162:+:10383..12008
Molecular Weight (calculated)
38670.7 Da
IEP (calculated)
7.236
GRAVY (calculated)
-0.739
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYFSPHTYN SSLSFSLVLN PKGKDKSFKF LYLLYMDLSV LERVKWLQQQ QMVSPDFFEI LGSDGREELK RVESYLGNNN DELQSFRHYE TIDGCISRTS
101: SFQIEQVKNN EENRVIALQH KRKTEGKTEK IENKKKKKIK TEDETESSMK GKSNMSNSET SSEIQKRDYI HVRARRGEAT DRHSLAERAR REKLSKKMKC
201: LQDIVPGCNK VTGKAGMLDE IINYVQSLQQ QVEFLSMKLS VLNPELEYHI NELSTKQFQA CFTDLPEAVS KQLMMVDASS FPLQHQESLD YSVINSIQTT
301: TLGSKDQTSS GWEIHSQSLY NNLRTDSVSS FFSLE
101: SFQIEQVKNN EENRVIALQH KRKTEGKTEK IENKKKKKIK TEDETESSMK GKSNMSNSET SSEIQKRDYI HVRARRGEAT DRHSLAERAR REKLSKKMKC
201: LQDIVPGCNK VTGKAGMLDE IINYVQSLQQ QVEFLSMKLS VLNPELEYHI NELSTKQFQA CFTDLPEAVS KQLMMVDASS FPLQHQESLD YSVINSIQTT
301: TLGSKDQTSS GWEIHSQSLY NNLRTDSVSS FFSLE
001: MDLSVLDRLK WLQQQQMVSP EFLQILGSDG REELKRVESY LGNNNDELQS FRHFPEFGPD YDTTDGCISR TSSFHMEPVK NNGHSRAITL QNKRKPEGKT
101: EKREKKKIKA EDETEPSMKG KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV TGKAGMLDEI INYVQSLQQQ
201: VEFLSMKLSV INPELECHID DLSAKQFQAY FTGPPEGDSK QSIMADFRSF PLHQQGSLDY SVINSDHTTS LGAKDHTSSS WETHSQCLYN SLRTDSVSNF
301: FSLK
101: EKREKKKIKA EDETEPSMKG KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV TGKAGMLDEI INYVQSLQQQ
201: VEFLSMKLSV INPELECHID DLSAKQFQAY FTGPPEGDSK QSIMADFRSF PLHQQGSLDY SVINSDHTTS LGAKDHTSSS WETHSQCLYN SLRTDSVSNF
301: FSLK
Arabidopsis Description
BEE2Transcription factor BEE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VJ4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.