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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
MultiLoc:cytosol
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G111110.2
HORVU3Hr1G030720.2
HORVU3Hr1G066050.1
HORVU4Hr1G060500.11
HORVU6Hr1G016250.1
HORVU6Hr1G037110.1
HORVU7Hr1G043560.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18300.3 HORVU3Hr1G030720.2 AT2G18300.3 23221598
AT2G18300.3 HORVU3Hr1G066050.1 AT2G18300.3 23221598
AT2G18300.3 HORVU6Hr1G016250.1 AT2G18300.3 23221598
AT2G18300.3 HORVU6Hr1G037110.1 AT2G18300.3 23221598
AT2G18300.3 HORVU7Hr1G043560.1 AT2G18300.3 23221598
AT4G36540.1 HORVU3Hr1G030720.2 AT2G18300.3 23221598
AT4G36540.1 HORVU3Hr1G066050.1 AT2G18300.3 23221598
AT4G36540.1 HORVU6Hr1G016250.1 AT2G18300.3 23221598
AT4G36540.1 HORVU6Hr1G037110.1 AT2G18300.3 23221598
AT4G36540.1 HORVU7Hr1G043560.1 AT2G18300.3 23221598
AT4G36540.1 HORVU2Hr1G111110.2 AT2G43060.1 21798944
AT4G36540.1 HORVU4Hr1G060500.11 AT5G59210.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU7Hr1G043560.1 Barley nucleus 58.7 55.1
HORVU3Hr1G030720.2 Barley cytosol, nucleus, vacuole 55.43 40.48
HORVU3Hr1G066050.1 Barley nucleus 53.26 13.73
HORVU6Hr1G037110.1 Barley plastid 44.57 13.27
Bra017765.1-P Field mustard cytosol, extracellular, nucleus, plastid 33.7 11.57
CDY42693 Canola nucleus 32.61 10.71
Bra010558.1-P Field mustard nucleus 33.7 10.33
CDY24785 Canola nucleus 32.61 10.0
CDY30317 Canola nucleus 33.7 9.37
CDY53074 Canola nucleus 33.7 9.25
CDY25162 Canola nucleus 33.7 9.2
CDY46300 Canola nucleus 33.7 9.2
Bra037226.1-P Field mustard nucleus 32.61 9.06
Bra039618.1-P Field mustard nucleus 32.61 8.9
AT4G36540.1 Thale cress nucleus 29.35 8.88
CDY51216 Canola nucleus 31.52 8.73
Bra024474.1-P Field mustard nucleus 30.43 8.36
AT2G18300.3 Thale cress nucleus 32.61 8.24
CDY20923 Canola nucleus 30.43 8.21
CDY29225 Canola nucleus 30.43 8.09
Zm00001d019127_P001 Maize plastid 5.43 1.63
Protein Annotations
EnsemblPlants:HORVU6Hr1G016250.1EnsemblPlantsGene:HORVU6Hr1G016250PANTHER:PTHR12565PANTHER:PTHR12565:SF184UniParc:UPI000B45FB68UniProt:A0A287TFF4
MapMan:35.2:::::
Description
No Description!
Coordinates
chrchr6H:+:36217741..36218277
Molecular Weight (calculated)
10143.8 Da
IEP (calculated)
10.343
GRAVY (calculated)
-1.371
Length
92 amino acids
Sequence
(BLAST)
1: MREATGPDSK KCKIENETVR PKVEEEAATA SDGSASGERG RNQAKGKGPK SKQPAADEPP RDYVHVRARR GQATDSHSLV ERVRREKTRT CI
Best Arabidopsis Sequence Match ( AT5G50915.3 )
(BLAST)
001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQVFHFFL
Arabidopsis Description
BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.