Factsheet for Bra037226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024474.1-P
Bra037226.1-P
Bra039618.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	Bra024474.1-P	AT2G18300.3	23221598
AT2G18300.3	Bra037226.1-P	AT2G18300.3	23221598
AT2G18300.3	Bra039618.1-P	AT2G18300.3	23221598

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51216	Canola	nucleus	93.35	93.07
Bra024474.1-P	Field mustard	nucleus	75.83	74.93
Bra039618.1-P	Field mustard	nucleus	67.67	66.47
AT2G18300.3	Thale cress	nucleus	56.8	51.65
Bra010558.1-P	Field mustard	nucleus	43.2	47.67
HORVU7Hr1G043560.1	Barley	nucleus	12.08	40.82
HORVU6Hr1G016250.1	Barley	nucleus	9.06	32.61
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	12.08	31.75
Bra017765.1-P	Field mustard	cytosol, extracellular, nucleus, plastid	25.68	31.72
Bra010993.1-P	Field mustard	nucleus	14.2	20.98
Bra008113.1-P	Field mustard	nucleus	16.31	20.61
Bra025910.1-P	Field mustard	nucleus	15.41	20.56
Bra015960.1-P	Field mustard	nucleus	15.41	19.47
Zm00001d019127_P001	Maize	plastid	17.22	18.63
HORVU6Hr1G037110.1	Barley	plastid	12.69	13.59
HORVU3Hr1G066050.1	Barley	nucleus	13.29	12.32

Protein Annotations

EnsemblPlants:Bra037226.1	EnsemblPlants:Bra037226.1-P	EnsemblPlantsGene:Bra037226	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002541ED5	UniProt:M4F815	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

AT2G18300 (E=2e-124) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA09:+:4898256..4899673

Molecular Weight (calculated)

37165.8 Da

IEP (calculated)

6.117

GRAVY (calculated)

-0.576

Length

331 amino acids

Sequence
(BLAST)

001: MLEGLVSPES LSFSYADMSV PERLKWLQQH QQQEVLSLSS NDSPELLQIL QFHGSNNDEL LQSTFSHFQM VGSGFGTNYN MGFGHSHEAM DGCISRTSSC
101: QIHPPDAMGV MLKNSEENRA ISLKNKRKSE DKTREEEKTE KKIKVEAERE SNISNKEASS DTSKETSKGA SQIQKLDYIH VRARRGQATD RHSLAERARR
201: EKISKKMKYL QDLVPGCNTV TGKAGVLDEI INYVQSLQRQ VEFLSMKLAV INPELEFAVE DLSVKQFQAY FTNFPVVIAS KPSVMVDVPL FPLDQQGSLN
301: LSVSNPNQTS IDAPSESWET QSQNLFASVL R

Best Arabidopsis Sequence Match ( AT2G18300.2 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ FQAYFTNVVA SKQSIMVDVP LFPLDQQGSL
301: DLSAINPNQT TSIEAPSGSW ETQSQSLYNT SSLGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.