Factsheet for Bra024474.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024474.1-P
Bra037226.1-P
Bra039618.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	Bra024474.1-P	AT2G18300.3	23221598
AT2G18300.3	Bra037226.1-P	AT2G18300.3	23221598
AT2G18300.3	Bra039618.1-P	AT2G18300.3	23221598

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29225	Canola	nucleus	83.28	80.64
Bra037226.1-P	Field mustard	nucleus	74.93	75.83
Bra039618.1-P	Field mustard	nucleus	68.96	68.55
AT2G18300.3	Thale cress	nucleus	57.31	52.75
Bra010558.1-P	Field mustard	nucleus	43.28	48.33
HORVU7Hr1G043560.1	Barley	nucleus	10.75	36.73
Bra017765.1-P	Field mustard	cytosol, extracellular, nucleus, plastid	24.78	30.97
HORVU6Hr1G016250.1	Barley	nucleus	8.36	30.43
HORVU3Hr1G030720.2	Barley	cytosol, nucleus, vacuole	10.75	28.57
Bra010993.1-P	Field mustard	nucleus	13.73	20.54
Bra008113.1-P	Field mustard	nucleus	15.82	20.23
Bra015960.1-P	Field mustard	nucleus	15.52	19.85
Bra025910.1-P	Field mustard	nucleus	14.63	19.76
Zm00001d019127_P001	Maize	plastid	15.82	17.32
HORVU6Hr1G037110.1	Barley	plastid	11.64	12.62
HORVU3Hr1G066050.1	Barley	nucleus	13.13	12.32

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra024474	EnsemblPlants:Bra024474.1	EnsemblPlants:Bra024474.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4E6R9	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253EF90	InterPro:bHLH_dom	SEG:seg

Description

AT2G18300 (E=5e-104) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA06:+:16007880..16009310

Molecular Weight (calculated)

37570.6 Da

IEP (calculated)

7.664

GRAVY (calculated)

-0.602

Length

335 amino acids

Sequence
(BLAST)

001: MLEGLVSPEN LSLSSMDMSV LERLKWLRQQ QQKQVVSQSS DNSPELLQIL QFHESNNDEL LQSTFSHFQM LGSGFGPNPN MGFGPSREAM DGCISRRSSL
101: QMDPVDTMGF MLKNSEENRT ISSKNKRKSE VKRREEEKTE KKIKVAAETE SNMKGKSSMS NNTEASSDTS KETSKGASEI QKLDYIHVRS RRGQATDRHS
201: LAERARREKI SKKMKYLQDI VPGCKKVTGQ AGMLDEIINY VQSLQTQVEF LSMKLAVLNS ELELALHAYF TNLPVVNASK PSIMVDVPLF PLDQQGSLDL
301: SVINLSQTTS IEAPSASWET QSRSLFNTSS LGFHY

Best Arabidopsis Sequence Match ( AT2G18300.1 )
(BLAST)

001: MLEGLVSQES LSLNSMDMSV LERLKWVQQQ QQQLQQVVSH SSNNSPELLQ ILQFHGSNND ELLESSFSQF QMLGSGFGPN YNMGFGPPHE SISRTSSCHM
101: EPVDTMEVLL KTGEETRAVA LKNKRKPEVK TREEQKTEKK IKVEAETESS MKGKSNMGNT EASSDTSKET SKGASENQKL DYIHVRARRG QATDRHSLAE
201: RARREKISKK MKYLQDIVPG CNKVTGKAGM LDEIINYVQC LQRQVEFLSM KLAVLNPELE LAVEDVSVKQ AYFTNVVASK QSIMVDVPLF PLDQQGSLDL
301: SAINPNQTTS IEAPSGSWET QSQSLYNTSS LGFHY

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.