Factsheet for HORVU3Hr1G030720.2

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, vacuole
Any Predictor:	nucleus, vacuole
MultiLoc:	nucleus
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G111110.2
HORVU3Hr1G030720.2
HORVU3Hr1G066050.1
HORVU4Hr1G060500.11
HORVU6Hr1G016250.1
HORVU6Hr1G037110.1
HORVU7Hr1G043560.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18300.3	HORVU3Hr1G030720.2	AT2G18300.3	23221598
AT2G18300.3	HORVU3Hr1G066050.1	AT2G18300.3	23221598
AT2G18300.3	HORVU6Hr1G016250.1	AT2G18300.3	23221598
AT2G18300.3	HORVU6Hr1G037110.1	AT2G18300.3	23221598
AT2G18300.3	HORVU7Hr1G043560.1	AT2G18300.3	23221598
AT4G36540.1	HORVU3Hr1G030720.2	AT2G18300.3	23221598
AT4G36540.1	HORVU3Hr1G066050.1	AT2G18300.3	23221598
AT4G36540.1	HORVU6Hr1G016250.1	AT2G18300.3	23221598
AT4G36540.1	HORVU6Hr1G037110.1	AT2G18300.3	23221598
AT4G36540.1	HORVU7Hr1G043560.1	AT2G18300.3	23221598
AT4G36540.1	HORVU2Hr1G111110.2	AT2G43060.1	21798944
AT4G36540.1	HORVU4Hr1G060500.11	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G043560.1	Barley	nucleus	64.29	82.65
HORVU6Hr1G016250.1	Barley	nucleus	40.48	55.43
HORVU6Hr1G037110.1	Barley	plastid	63.49	25.89
HORVU3Hr1G066050.1	Barley	nucleus	52.38	18.49
Bra017765.1-P	Field mustard	cytosol, extracellular, nucleus, plastid	30.95	14.55
CDY42693	Canola	nucleus	30.16	13.57
Bra010558.1-P	Field mustard	nucleus	31.75	13.33
CDY30317	Canola	nucleus	34.13	12.99
CDY25162	Canola	nucleus	34.13	12.76
CDY46300	Canola	nucleus	34.13	12.76
Bra039618.1-P	Field mustard	nucleus	33.33	12.46
CDY24785	Canola	nucleus	29.37	12.33
Bra037226.1-P	Field mustard	nucleus	31.75	12.08
CDY53074	Canola	nucleus	31.75	11.94
CDY51216	Canola	nucleus	30.16	11.45
CDY29225	Canola	nucleus	30.95	11.27
CDY20923	Canola	nucleus	30.16	11.14
Bra024474.1-P	Field mustard	nucleus	28.57	10.75
AT4G36540.1	Thale cress	nucleus	25.4	10.53
AT2G18300.3	Thale cress	nucleus	30.16	10.44
Zm00001d019127_P001	Maize	plastid	11.9	4.9

Protein Annotations

EnsemblPlants:HORVU3Hr1G030720.2	EnsemblPlantsGene:HORVU3Hr1G030720	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B469B3D	UniProt:A0A287KMB1	MapMan:15.5.32

Description

No Description!

Coordinates

chrchr3H:-:149469453..149470001

Molecular Weight (calculated)

13924.9 Da

IEP (calculated)

10.387

GRAVY (calculated)

-0.579

Length

126 amino acids

Sequence
(BLAST)

001: MGEATVPNSK KCKIEDETVR PKVEEEAATA SDGSAGGERG RKQAKGKGSK SKQPAADEPP RDYVHVRARR GQATDSHSLA ERVRREKITL KMKMLQDLQV
101: YSLSPALVAL LFLLIEKRVL AFFVSM

Best Arabidopsis Sequence Match ( AT5G50915.3 )
(BLAST)

001: MATFSYFQNY PHSLLDPLLF PTPHSSINLT SFIDQNHLYP LPNISTVEDI SFLEYNVDKT ENSGSEKLAN TTKTATTGSS SCDQLSHGPS AITNTGKTRG
101: RKARNSNNSK EGVEGRKSKK QKRGSKEEPP TDYIHVRARR GQATDSHSLA ERVRREKISE RMRTLQNLVP GCDKVTGKAL MLDEIINYVQ TLQTQVEFLS
201: MKLTSISPVV YDFGSDLDGL ILQSEMGSPE VGTSFTNAMP TTTPIFPSLL DNSVVPTHAQ VQVFHFFL

Arabidopsis Description

BHLH137Transcription factor bHLH137 [Source:UniProtKB/Swiss-Prot;Acc:Q93W88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.