Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G020200.1 | nucleus |
| HORVU4Hr1G009970.28 | nucleus |
| HORVU6Hr1G068980.2 | |
| HORVU7Hr1G029870.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 78.54 | 80.5 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 77.07 | 78.61 |
| TraesCS2A01G499000.1 | Wheat | plastid | 76.1 | 77.61 |
| Os04t0660100-01 | Rice | cytosol | 61.95 | 62.87 |
| KXG27318 | Sorghum | plastid | 54.15 | 53.62 |
| Zm00001d026510_P001 | Maize | nucleus | 53.66 | 52.88 |
| Zm00001d001982_P001 | Maize | nucleus | 52.2 | 51.44 |
| CDY30379 | Canola | cytosol | 13.66 | 45.16 |
| GSMUA_Achr11P... | Banana | nucleus | 33.66 | 43.67 |
| AT2G43060.1 | Thale cress | nucleus | 28.29 | 37.18 |
| Bra037738.1-P | Field mustard | nucleus | 27.8 | 36.08 |
| PGSC0003DMT400014179 | Potato | mitochondrion | 21.95 | 35.16 |
| CDY56346 | Canola | nucleus | 22.44 | 34.59 |
| CDY53659 | Canola | nucleus | 25.85 | 33.97 |
| CDY55504 | Canola | nucleus | 25.85 | 33.76 |
| Bra004740.1-P | Field mustard | nucleus | 25.85 | 33.76 |
| Solyc12g042010.1.1 | Tomato | mitochondrion | 20.49 | 33.07 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G111110.2 | EnsemblPlantsGene:HORVU2Hr1G111110 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009741 |
| GO:GO:0009826 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0040007 | PANTHER:PTHR33124 |
| PANTHER:PTHR33124:SF8 | SEG:seg | UniParc:UPI000B46FA7E | UniProt:A0A287JFN4 | MapMan:15.5.32 | : |
Description
No Description!
Coordinates
chrchr2H:+:722129900..722130632
Molecular Weight (calculated)
22014.8 Da
IEP (calculated)
12.423
GRAVY (calculated)
-0.174
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: GRILRLRHPL SLSLSISLHP RPSLCGVGWG EESASSTSKR MLAFHFLRAL SRIHGAAGPA RRRTRTIRRA AYSSMARATG PRRAWSRALL LQAHARARRS
101: RTELSTRAAV LVRRRVVAGP AAPPARAAPV GGQVSSSAAR AALVPPPAAA RQAGEPARSD ALRRLVPGGA GMEYCSLLEE TADYVRCLRA QVQLMQGLAD
201: LFSCQ
101: RTELSTRAAV LVRRRVVAGP AAPPARAAPV GGQVSSSAAR AALVPPPAAA RQAGEPARSD ALRRLVPGGA GMEYCSLLEE TADYVRCLRA QVQLMQGLAD
201: LFSCQ
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.