Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67440 | |
| CDX68172 | |
| CDX68180 | |
| CDX69067 | |
| CDX73095 | |
| CDX73105 | |
| CDX75440 | |
| CDX76288 | |
| CDX77488 | nucleus |
| CDX81575 | nucleus |
| CDX85122 | nucleus |
| CDX85840 | |
| CDX85841 | |
| CDX85849 | |
| CDX86409 | nucleus |
| CDX87096 | |
| CDX88163 | |
| CDX96550 | |
| CDX96558 | |
| CDY00110 | nucleus |
| CDY00995 | |
| CDY04040 | nucleus |
| CDY05373 | |
| CDY05479 | |
| CDY05960 | |
| CDY17466 | |
| CDY18099 | nucleus |
| CDY19812 | |
| CDY20013 | nucleus |
| CDY20659 | nucleus |
| CDY22605 | nucleus |
| CDY24160 | |
| CDY25986 | nucleus |
| CDY31048 | nucleus |
| CDY33821 | nucleus |
| CDY35518 | |
| CDY36316 | |
| CDY36934 | |
| CDY45835 | nucleus |
| CDY53834 | nucleus |
| CDY56230 | nucleus |
| CDY61581 | nucleus |
| CDY63469 | nucleus |
| CDY65320 | |
| CDY65537 | |
| CDY69564 | |
| CDY70014 | nucleus |
| CDY72360 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037738.1-P | Field mustard | nucleus | 100.0 | 39.24 |
| CDY56346 | Canola | nucleus | 83.87 | 39.1 |
| CDY55504 | Canola | nucleus | 88.71 | 35.03 |
| AT2G43060.1 | Thale cress | nucleus | 83.87 | 33.33 |
| CDY53659 | Canola | nucleus | 82.26 | 32.69 |
| GSMUA_Achr11P... | Banana | nucleus | 45.16 | 17.72 |
| PGSC0003DMT400014179 | Potato | mitochondrion | 33.87 | 16.41 |
| Solyc12g042010.1.1 | Tomato | mitochondrion | 32.26 | 15.75 |
| Os04t0660100-01 | Rice | cytosol | 50.0 | 15.35 |
| TraesCS2B01G527100.1 | Wheat | nucleus, plastid | 48.39 | 14.93 |
| TraesCS2D01G499200.1 | Wheat | nucleus, plastid | 46.77 | 14.5 |
| KXG27318 | Sorghum | plastid | 48.39 | 14.49 |
| TraesCS2A01G499000.1 | Wheat | plastid | 46.77 | 14.43 |
| Zm00001d026510_P001 | Maize | nucleus | 48.39 | 14.42 |
| HORVU2Hr1G111110.2 | Barley | mitochondrion | 45.16 | 13.66 |
| Zm00001d001982_P001 | Maize | nucleus | 45.16 | 13.46 |
Protein Annotations
| EnsemblPlants:CDY30379 | EnsemblPlantsGene:GSBRNA2T00045070001 | GO:A0A078GZ00 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR036638 | PANTHER:PTHR33124 | PANTHER:PTHR33124:SF31 | ProteinID:CDY30379 |
| ProteinID:CDY30379.1 | SUPFAM:SSF47459 | UniParc:UPI0004EDBC12 | UniProt:A0A078GZ00 | MapMan:15.5.32 | : |
Description
BnaA04g24800DBnaA04g24800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ00]
Coordinates
chrLK032253:+:38265..38453
Molecular Weight (calculated)
6904.5 Da
IEP (calculated)
8.784
GRAVY (calculated)
-0.455
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MRRRSNRGDP IEDVAAERLR NLVPGGGGME TSKLMEETAH YIKCLSMQVK VMQCLVDGLS PK
001: MASADKLINT DVPEKDVFAF HFLQSLSNLR KQNPFDTPDQ KNYRVRKIKK AAYVSMARAA GGSSRLWSRA LLRRADKDDN KIVRFSRRKW KISSKRRRSN
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
101: QRAPVVEEAA ERLRNLVPGG GGMETSKLME ETAHYIKCLS MQVKVMQCLV DGLSPK
Arabidopsis Description
IBH1Transcription factor IBH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.