Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018117.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY24160 | Canola | nucleus | 97.85 | 97.85 |
| AT3G47710.1 | Thale cress | nucleus | 88.17 | 89.13 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.19 | 76.67 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.19 | 76.67 |
| Solyc06g070910.2.1 | Tomato | nucleus | 73.12 | 73.91 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.12 | 73.12 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.12 | 73.12 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.12 | 73.12 |
| CDY46428 | Canola | nucleus | 73.12 | 72.34 |
| CDY40269 | Canola | nucleus | 72.04 | 71.28 |
| CDY69564 | Canola | cytosol, nucleus | 66.67 | 70.45 |
| CDY28427 | Canola | nucleus | 70.97 | 70.21 |
| CDX67440 | Canola | mitochondrion | 68.82 | 69.57 |
| CDY65320 | Canola | mitochondrion | 68.82 | 69.57 |
| CDY16207 | Canola | nucleus | 70.97 | 69.47 |
| CDX69545 | Canola | mitochondrion, plastid | 66.67 | 65.96 |
| CDX85562 | Canola | mitochondrion | 65.59 | 65.59 |
| CDX91006 | Canola | mitochondrion | 65.59 | 65.59 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 65.22 |
| CDX85055 | Canola | mitochondrion, plastid | 65.59 | 64.89 |
| CDY68961 | Canola | mitochondrion | 64.52 | 64.52 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.44 | 64.13 |
| CDX78615 | Canola | mitochondrion | 64.52 | 63.83 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.37 | 63.04 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.29 | 61.96 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.29 | 61.96 |
| CDY63469 | Canola | nucleus | 60.22 | 60.22 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HHS2 | UniProt:A0A078HHS2 | EnsemblPlants:CDY36934 | ProteinID:CDY36934 |
| ProteinID:CDY36934.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00063076001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF172 | SUPFAM:SSF47459 | UniParc:UPI000253F3EA | InterPro:bHLH_dom | SEG:seg |
Description
BnaA06g17190DBnaA06g17190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHS2]
Coordinates
chrLK032387:-:247219..247993
Molecular Weight (calculated)
10476.5 Da
IEP (calculated)
9.364
GRAVY (calculated)
-0.568
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRSSR QTGTSMISED QINDLVLQLH RLLPELGNNN RRSGKVSASK VLQETCTYIR NLNKEVDDLS ERLSQLLEST DSAQAALIRS LLM
1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ
Arabidopsis Description
PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.