CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY20923
CDY25162
CDY29225
CDY30317
CDY30379
CDY46300
CDY51216
CDY53659
CDY55504
CDY56346

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39860.1	CDY20923	AT2G18300.3	23221598
AT5G39860.1	CDY25162	AT2G18300.3	23221598
AT5G39860.1	CDY29225	AT2G18300.3	23221598
AT5G39860.1	CDY30317	AT2G18300.3	23221598
AT5G39860.1	CDY46300	AT2G18300.3	23221598
AT5G39860.1	CDY51216	AT2G18300.3	23221598
AT5G39860.1	CDY30379	AT2G43060.1	20009022
AT5G39860.1	CDY53659	AT2G43060.1	20009022
AT5G39860.1	CDY55504	AT2G43060.1	20009022
AT5G39860.1	CDY56346	AT2G43060.1	20009022

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65320	Canola	mitochondrion	100.0	100.0
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	98.91	98.91
AT5G39860.1	Thale cress	mitochondrion	93.48	93.48
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	84.78	84.78
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	83.7	83.7
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	83.7	83.7
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	82.61	82.61
CDY63469	Canola	nucleus	82.61	81.72
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	81.52	81.52
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	75.0	76.67
KRG93518	Soybean	mitochondrion	75.0	75.82
KRH18488	Soybean	mitochondrion	75.0	75.82
PGSC0003DMT400003587	Potato	nucleus	75.0	75.0
Solyc02g087860.2.1	Tomato	nucleus	75.0	75.0
PGSC0003DMT400017748	Potato	nucleus	72.83	72.04
CDX91006	Canola	mitochondrion	72.83	72.04
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	71.74	71.74
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	71.74	71.74
Solyc02g067380.2.1	Tomato	nucleus	72.83	71.28
CDX69545	Canola	mitochondrion, plastid	72.83	71.28
CDX85562	Canola	mitochondrion	71.74	70.97
CDX85055	Canola	mitochondrion, plastid	71.74	70.21
CDY46428	Canola	nucleus	71.74	70.21
CDX78615	Canola	mitochondrion	71.74	70.21
CDX96550	Canola	cytosol, mitochondrion, nucleus, plastid	68.48	70.0
CDY24160	Canola	nucleus	70.65	69.89
CDY68961	Canola	mitochondrion	70.65	69.89
CDX73095	Canola	cytosol, mitochondrion, nucleus, plastid	67.39	68.89
CDY36934	Canola	nucleus	69.57	68.82
CDY40269	Canola	nucleus	69.57	68.09
CDY28427	Canola	nucleus	68.48	67.02
PGSC0003DMT400008752	Potato	plastid	69.57	66.67
CDY16207	Canola	nucleus	68.48	66.32
CDY69564	Canola	cytosol, nucleus	63.04	65.91
CDX85841	Canola	cytosol, mitochondrion, nucleus, plastid	66.3	65.59
CDX85840	Canola	cytosol, mitochondrion, nucleus, plastid	66.3	65.59
CDX68180	Canola	cytosol, mitochondrion, nucleus, plastid	66.3	65.59

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078JFU2	UniProt:A0A078JFU2	EnsemblPlants:CDX67440	ProteinID:CDX67440
ProteinID:CDX67440.1	ProteinID:CDY65320.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00098541001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	SUPFAM:SSF47459	UniParc:UPI0000E649EE	InterPro:bHLH_dom

Description

BnaA07g14800DBnaA07g14800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFU2]

Coordinates

chrLK031787:+:268413..271317

Molecular Weight (calculated)

10523.6 Da

IEP (calculated)

9.362

GRAVY (calculated)

-0.627

Length

92 amino acids

Sequence
(BLAST)

1: MSNRRSRQSS SAPRISDDQI IDLVTKLRQI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN REVDNLSERL AQLLESVDED SPQAAVIRSL LM

Best Arabidopsis Sequence Match ( AT5G39860.1 )
(BLAST)

1: MSNRRSRQSS SAPRISDNQM IDLVSKLRQI LPEIGQRRRS DKASASKVLQ ETCNYIRNLN REVDNLSERL SQLLESVDED SPEAAVIRSL LM

Arabidopsis Description

PRE1Transcription factor PRE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.