CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89982
CDY15232
CDY32456
CDY55316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26945.1	CDX89982	AT1G02340.1	16786307
AT1G26945.1	CDY15232	AT1G02340.1	16786307
AT1G26945.1	CDY32456	AT1G02340.1	16786307
AT1G26945.1	CDY55316	AT1G02340.1	16786307

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024672.1-P	Field mustard	nucleus	100.0	100.0
AT1G26945.1	Thale cress	nucleus	94.74	95.74
CDY46428	Canola	nucleus	94.74	95.74
CDY40269	Canola	nucleus	93.68	94.68
CDY28427	Canola	nucleus	92.63	93.62
VIT_01s0026g02030.t01	Wine grape	mitochondrion	80.0	82.61
Solyc05g007210.2.1	Tomato	nucleus	73.68	81.4
PGSC0003DMT400059345	Potato	nucleus	73.68	81.4
CDX96550	Canola	cytosol, mitochondrion, nucleus, plastid	75.79	80.0
CDX73095	Canola	cytosol, mitochondrion, nucleus, plastid	74.74	78.89
CDX85840	Canola	cytosol, mitochondrion, nucleus, plastid	74.74	76.34
CDX85841	Canola	cytosol, mitochondrion, nucleus, plastid	74.74	76.34
CDX68180	Canola	cytosol, mitochondrion, nucleus, plastid	74.74	76.34
CDY69564	Canola	cytosol, nucleus	69.47	75.0
CDX85562	Canola	mitochondrion	71.58	73.12
CDY68961	Canola	mitochondrion	70.53	72.04
CDX91006	Canola	mitochondrion	70.53	72.04
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	69.47	71.74
CDX69545	Canola	mitochondrion, plastid	70.53	71.28
CDY24160	Canola	nucleus	69.47	70.97
CDY36934	Canola	nucleus	69.47	70.97
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	68.42	70.65
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	68.42	70.65
CDX85055	Canola	mitochondrion, plastid	69.47	70.21
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	67.37	69.57
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	67.37	69.57
CDY65320	Canola	mitochondrion	66.32	68.48
CDX67440	Canola	mitochondrion	66.32	68.48
CDX78615	Canola	mitochondrion	67.37	68.09
CDY63469	Canola	nucleus	66.32	67.74

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078FTM9	UniProt:A0A078FTM9	EnsemblPlants:CDY16207	ProteinID:CDY16207
ProteinID:CDY16207.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00090660001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	SUPFAM:SSF47459	UniParc:UPI0002542121	InterPro:bHLH_dom	SEG:seg

Description

BnaA09g29410DBnaA09g29410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTM9]

Coordinates

chrLK032061:+:495732..497263

Molecular Weight (calculated)

10834.6 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.737

Length

95 amino acids

Sequence
(BLAST)

1: MSSRRSSRSR QSSGSSRISD DQISDLVTRL QHLIPELRRR RSDKVSASTV LQETCNYIRN LHREVDDLSD RLSELLATTD DNSAEAAIIR SLLNY

Best Arabidopsis Sequence Match ( AT1G26945.1 )
(BLAST)

1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY

Arabidopsis Description

PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.