Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26945.1 | CDX89982 | AT1G02340.1 | 16786307 |
| AT1G26945.1 | CDY15232 | AT1G02340.1 | 16786307 |
| AT1G26945.1 | CDY32456 | AT1G02340.1 | 16786307 |
| AT1G26945.1 | CDY55316 | AT1G02340.1 | 16786307 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012435.1-P | Field mustard | nucleus | 98.94 | 98.94 |
| CDY40269 | Canola | nucleus | 98.94 | 98.94 |
| AT1G26945.1 | Thale cress | nucleus | 95.74 | 95.74 |
| CDY46428 | Canola | nucleus | 95.74 | 95.74 |
| CDY16207 | Canola | nucleus | 93.62 | 92.63 |
| VIT_01s0026g02030.t01 | Wine grape | mitochondrion | 81.91 | 83.7 |
| Solyc05g007210.2.1 | Tomato | nucleus | 75.53 | 82.56 |
| PGSC0003DMT400059345 | Potato | nucleus | 75.53 | 82.56 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.47 | 77.78 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.4 | 76.67 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.4 | 74.19 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.4 | 74.19 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.4 | 74.19 |
| CDY69564 | Canola | cytosol, nucleus | 68.09 | 72.73 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.21 | 71.74 |
| CDY24160 | Canola | nucleus | 70.21 | 70.97 |
| CDY36934 | Canola | nucleus | 70.21 | 70.97 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 69.15 | 70.65 |
| CDX85562 | Canola | mitochondrion | 69.15 | 69.89 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.09 | 69.57 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 68.09 | 69.57 |
| CDX91006 | Canola | mitochondrion | 68.09 | 68.82 |
| CDY68961 | Canola | mitochondrion | 68.09 | 68.82 |
| CDX67440 | Canola | mitochondrion | 67.02 | 68.48 |
| CDY65320 | Canola | mitochondrion | 67.02 | 68.48 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 67.02 | 68.48 |
| CDX69545 | Canola | mitochondrion, plastid | 68.09 | 68.09 |
| CDY63469 | Canola | nucleus | 67.02 | 67.74 |
| CDX85055 | Canola | mitochondrion, plastid | 67.02 | 67.02 |
| CDX78615 | Canola | mitochondrion | 64.89 | 64.89 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078GTH8 | UniProt:A0A078GTH8 | EnsemblPlants:CDY28427 | ProteinID:CDY28427 |
| ProteinID:CDY28427.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00040293001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | SUPFAM:SSF47459 | UniParc:UPI0004EB76F6 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC07g12550DBnaC07g12550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTH8]
Coordinates
chrLK032220:+:99299..100617
Molecular Weight (calculated)
10714.5 Da
IEP (calculated)
7.419
GRAVY (calculated)
-0.701
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSSCSR QSGSSRISDD QISDLVTKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSEFLASTDD NSAEAAIIRS LLDY
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Arabidopsis Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.