Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 98.91 | 98.91 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 94.57 | 94.57 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 93.48 | 93.48 |
| AT3G28857.1 | Thale cress | mitochondrion | 92.39 | 92.39 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 92.39 | 92.39 |
| CDY63469 | Canola | nucleus | 92.39 | 91.4 |
| CDX67440 | Canola | mitochondrion | 84.78 | 84.78 |
| CDY65320 | Canola | mitochondrion | 84.78 | 84.78 |
| VIT_14s0108g00420.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 77.17 | 78.89 |
| KRH18488 | Soybean | mitochondrion | 77.17 | 78.02 |
| KRG93518 | Soybean | mitochondrion | 77.17 | 78.02 |
| PGSC0003DMT400003587 | Potato | nucleus | 76.09 | 76.09 |
| Solyc02g087860.2.1 | Tomato | nucleus | 76.09 | 76.09 |
| PGSC0003DMT400017748 | Potato | nucleus | 76.09 | 75.27 |
| KRH01162 | Soybean | cytosol, mitochondrion, nucleus, plastid | 75.0 | 75.0 |
| KRH40108 | Soybean | cytosol, mitochondrion, nucleus, plastid | 75.0 | 75.0 |
| Solyc02g067380.2.1 | Tomato | nucleus | 76.09 | 74.47 |
| CDY46428 | Canola | nucleus | 75.0 | 73.4 |
| CDY40269 | Canola | nucleus | 72.83 | 71.28 |
| CDY28427 | Canola | nucleus | 71.74 | 70.21 |
| CDX91006 | Canola | mitochondrion | 70.65 | 69.89 |
| CDY16207 | Canola | nucleus | 71.74 | 69.47 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 67.39 | 68.89 |
| CDX85562 | Canola | mitochondrion | 69.57 | 68.82 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.3 | 67.78 |
| CDY68961 | Canola | mitochondrion | 68.48 | 67.74 |
| CDX69545 | Canola | mitochondrion, plastid | 68.48 | 67.02 |
| PGSC0003DMT400008752 | Potato | plastid | 69.57 | 66.67 |
| CDX78615 | Canola | mitochondrion | 67.39 | 65.96 |
| CDX85055 | Canola | mitochondrion, plastid | 67.39 | 65.96 |
| CDY24160 | Canola | nucleus | 66.3 | 65.59 |
| CDY69564 | Canola | cytosol, nucleus | 61.96 | 64.77 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.22 | 64.52 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.22 | 64.52 |
| CDY36934 | Canola | nucleus | 65.22 | 64.52 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.22 | 64.52 |
Protein Annotations
| EnsemblPlants:CDY20013 | EnsemblPlantsGene:GSBRNA2T00009845001 | Gene3D:4.10.280.10 | GO:A0A078G5U1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY20013 |
| ProteinID:CDY20013.1 | SUPFAM:SSF47459 | UniParc:UPI0004EE35DB | UniProt:A0A078G5U1 | MapMan:15.5.32 | : |
Description
BnaA09g02380DBnaA09g02380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5U1]
Coordinates
chrLK032102:+:419621..420642
Molecular Weight (calculated)
10671.8 Da
IEP (calculated)
9.332
GRAVY (calculated)
-0.616
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNRRSRQSS SALRISDDQM IDLVSKLRVL LPEIRERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SQEAAVIRSL LM
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
Arabidopsis Description
PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.