Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 92.39 | 92.39 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 91.3 | 91.3 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 90.22 | 90.22 |
| Bra025358.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 90.22 | 90.22 |
| Bra033063.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 90.22 | 90.22 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 90.22 | 90.22 |
| CDY63469 | Canola | nucleus | 90.22 | 89.25 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 89.13 | 89.13 |
| AT5G39860.1 | Thale cress | mitochondrion | 86.96 | 86.96 |
| VIT_14s0108g00420.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 77.17 | 78.89 |
| KRG93518 | Soybean | mitochondrion | 77.17 | 78.02 |
| KRH18488 | Soybean | mitochondrion | 77.17 | 78.02 |
| PGSC0003DMT400003587 | Potato | nucleus | 76.09 | 76.09 |
| Solyc02g087860.2.1 | Tomato | nucleus | 76.09 | 76.09 |
| PGSC0003DMT400017748 | Potato | nucleus | 76.09 | 75.27 |
| Solyc02g067380.2.1 | Tomato | nucleus | 76.09 | 74.47 |
| KRH01162 | Soybean | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| KRH40108 | Soybean | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| AT1G26945.1 | Thale cress | nucleus | 72.83 | 71.28 |
| PGSC0003DMT400008752 | Potato | plastid | 72.83 | 69.79 |
| AT5G15160.1 | Thale cress | mitochondrion | 70.65 | 69.15 |
| AT1G74500.1 | Thale cress | nucleus | 65.22 | 64.52 |
| AT3G47710.1 | Thale cress | nucleus | 64.13 | 64.13 |
Protein Annotations
| MapMan:15.5.32 | EntrezGene:2745895 | Gene3D:4.10.280.10 | UniProt:A0A178V8X2 | ProteinID:AEE77497.1 | ArrayExpress:AT3G28857 |
| EnsemblPlantsGene:AT3G28857 | RefSeq:AT3G28857 | TAIR:AT3G28857 | RefSeq:AT3G28857-TAIR-G | EnsemblPlants:AT3G28857.1 | TAIR:AT3G28857.1 |
| EMBL:AY088680 | ProteinID:BAB02128.1 | EMBL:BT024640 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009987 | GO:GO:0040007 | GO:GO:0040008 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_974372.1 | ProteinID:OAP02141.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | UniProt:Q9LJX1 | SUPFAM:SSF47459 |
| UniParc:UPI00000A6878 | InterPro:bHLH_dom | : | : | : | : |
Description
PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
Coordinates
chr3:-:10855623..10856787
Molecular Weight (calculated)
10699.7 Da
IEP (calculated)
8.525
GRAVY (calculated)
-0.754
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.