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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • mitochondrion 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67440 Canola mitochondrion 93.48 93.48
CDY65320 Canola mitochondrion 93.48 93.48
Bra028443.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 92.39 92.39
AT3G28857.1 Thale cress mitochondrion 86.96 86.96
Solyc02g087860.2.1 Tomato nucleus 77.17 77.17
PGSC0003DMT400003587 Potato nucleus 77.17 77.17
VIT_14s0108g00420.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 75.0 76.67
KRG93518 Soybean mitochondrion 75.0 75.82
KRH18488 Soybean mitochondrion 75.0 75.82
PGSC0003DMT400017748 Potato nucleus 75.0 74.19
Solyc02g067380.2.1 Tomato nucleus 75.0 73.4
KRH01162 Soybean cytosol, mitochondrion, nucleus, plastid 71.74 71.74
KRH40108 Soybean cytosol, mitochondrion, nucleus, plastid 71.74 71.74
AT5G15160.1 Thale cress mitochondrion 71.74 70.21
PGSC0003DMT400008752 Potato plastid 71.74 68.75
AT1G26945.1 Thale cress nucleus 69.57 68.09
AT3G47710.1 Thale cress nucleus 64.13 64.13
AT1G74500.1 Thale cress nucleus 64.13 63.44
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10EntrezGene:833982UniProt:A0A178UFD8ProteinID:AED94484.1ArrayExpress:AT5G39860
EnsemblPlantsGene:AT5G39860RefSeq:AT5G39860TAIR:AT5G39860RefSeq:AT5G39860-TAIR-GEnsemblPlants:AT5G39860.1TAIR:AT5G39860.1
EMBL:AY088246ProteinID:BAB10210.1ncoils:CoilGO:GO:0003674GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009628GO:GO:0009640GO:GO:0009653GO:GO:0009719
GO:GO:0009740GO:GO:0009741GO:GO:0009742GO:GO:0009791GO:GO:0009826GO:GO:0009987
GO:GO:0016043GO:GO:0016049GO:GO:0040007GO:GO:0040008GO:GO:0046983GO:GO:0048510
InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638RefSeq:NP_198802.1ProteinID:OAO91887.1PFAM:PF00010
PO:PO:0000005PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0009066PO:PO:0020030PO:PO:0020038PO:PO:0025022
PO:PO:0025281Symbol:PRE1PFscan:PS50888PANTHER:PTHR12565PANTHER:PTHR12565:SF299UniProt:Q9FLE9
SUPFAM:SSF47459UniParc:UPI00000A9A1EInterPro:bHLH_dom:::
Description
PRE1Transcription factor PRE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE9]
Coordinates
chr5:+:15957368..15958559
Molecular Weight (calculated)
10515.5 Da
IEP (calculated)
9.362
GRAVY (calculated)
-0.711
Length
92 amino acids
Sequence
(BLAST)
1: MSNRRSRQSS SAPRISDNQM IDLVSKLRQI LPEIGQRRRS DKASASKVLQ ETCNYIRNLN REVDNLSERL SQLLESVDED SPEAAVIRSL LM
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.