Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69564 | Canola | cytosol, nucleus | 91.4 | 96.59 |
| Bra008154.1-P | Field mustard | nucleus | 95.7 | 95.7 |
| Bra015906.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 92.47 | 95.56 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 92.47 | 95.56 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 94.62 | 94.62 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 94.62 | 94.62 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 94.62 | 94.62 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 91.4 | 94.44 |
| Bra003797.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 93.55 | 93.55 |
| Solyc06g070910.2.1 | Tomato | nucleus | 81.72 | 82.61 |
| AT1G26945.1 | Thale cress | nucleus | 76.34 | 75.53 |
| AT3G47710.1 | Thale cress | nucleus | 68.82 | 69.57 |
| AT3G28857.1 | Thale cress | mitochondrion | 64.52 | 65.22 |
| AT5G39860.1 | Thale cress | mitochondrion | 63.44 | 64.13 |
| AT5G15160.1 | Thale cress | mitochondrion | 62.37 | 61.7 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:843791 | UniProt:A0A178WAL8 | ProteinID:AAG52350.1 | ProteinID:AEE35600.1 |
| EMBL:AK227395 | ArrayExpress:AT1G74500 | EnsemblPlantsGene:AT1G74500 | RefSeq:AT1G74500 | TAIR:AT1G74500 | RefSeq:AT1G74500-TAIR-G |
| EnsemblPlants:AT1G74500.1 | TAIR:AT1G74500.1 | Symbol:ATBS1 | EMBL:AY088286 | EMBL:BT003046 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009740 | GO:GO:0009742 | GO:GO:0009790 | GO:GO:0009987 |
| GO:GO:0010086 | GO:GO:0040007 | GO:GO:0040008 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | RefSeq:NP_177590.1 | ProteinID:OAP15226.1 | PFAM:PF00010 | PO:PO:0000045 | PO:PO:0001185 |
| PO:PO:0009005 | PO:PO:0020109 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF172 | UniProt:Q9CA64 |
| SUPFAM:SSF47459 | UniParc:UPI000000BEAF | InterPro:bHLH_dom | SEG:seg | : | : |
Description
PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
Coordinates
chr1:-:27997919..27998821
Molecular Weight (calculated)
10581.5 Da
IEP (calculated)
9.397
GRAVY (calculated)
-0.680
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.