Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g006660.1.1 | |
| Solyc11g013370.1.1 | |
| Solyc12g042010.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G74500.1 | Solyc12g042010.1.1 | AT2G43060.1 | 21798944 |
| AT1G74500.1 | Solyc11g013370.1.1 | AT2G44950.1 | 21798944 |
| AT1G74500.1 | Solyc08g006660.1.1 | AT4G24840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015906.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 80.43 | 82.22 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 80.43 | 82.22 |
| AT1G74500.1 | Thale cress | nucleus | 82.61 | 81.72 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 79.35 | 81.11 |
| CDY69564 | Canola | cytosol, nucleus | 77.17 | 80.68 |
| Bra008154.1-P | Field mustard | nucleus | 80.43 | 79.57 |
| Solyc05g007210.2.1 | Tomato | nucleus | 72.83 | 77.91 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.17 | 76.34 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.17 | 76.34 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 77.17 | 76.34 |
| Bra003797.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 76.09 | 75.27 |
| Bra018117.1-P | Field mustard | nucleus | 73.91 | 73.12 |
| CDY24160 | Canola | nucleus | 73.91 | 73.12 |
| CDY36934 | Canola | nucleus | 73.91 | 73.12 |
| AT3G47710.1 | Thale cress | nucleus | 70.65 | 70.65 |
| Solyc02g087860.2.1 | Tomato | nucleus | 69.57 | 69.57 |
| Solyc04g005660.2.1 | Tomato | mitochondrion | 71.74 | 69.47 |
| Solyc02g067380.2.1 | Tomato | nucleus | 68.48 | 67.02 |
Protein Annotations
| EnsemblPlants:Solyc06g070910.2.1 | EnsemblPlantsGene:Solyc06g070910.2 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF172 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 |
| UniParc:UPI0002766D33 | UniProt:K4C8G4 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chr6:+:43552368..43554839
Molecular Weight (calculated)
10444.3 Da
IEP (calculated)
8.529
GRAVY (calculated)
-0.746
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRSSR HSGGSRISED QINDLVNKLQ QLLPELRNRS SDKVSASRVL QDTCNYIKSL HREVDDLSDR LSELLESSDT TQAALIRSLL MQ
1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ
Arabidopsis Description
PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.