Factsheet for Bra018117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36934	Canola	nucleus	100.0	100.0
CDY24160	Canola	nucleus	97.85	97.85
AT3G47710.1	Thale cress	nucleus	88.17	89.13
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	74.19	76.67
Solyc06g070910.2.1	Tomato	nucleus	73.12	73.91
Bra016299.1-P	Field mustard	nucleus	73.12	72.34
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	72.04	72.04
Bra012435.1-P	Field mustard	nucleus	72.04	71.28
Bra008154.1-P	Field mustard	nucleus	69.89	69.89
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	68.82	69.57
Bra024672.1-P	Field mustard	nucleus	70.97	69.47
Bra008716.1-P	Field mustard	mitochondrion, plastid	66.67	65.96
Bra023508.1-P	Field mustard	mitochondrion	65.59	65.59
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.52	63.83
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.37	63.04
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.29	61.96

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra018117	EnsemblPlants:Bra018117.1	EnsemblPlants:Bra018117.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009640	GO:GO:0009791	GO:GO:0046983	GO:GO:0048510	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4DNN0	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172
SUPFAM:SSF47459	UniParc:UPI000253F3EA	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT3G47710 (E=2e-034) | bHLH family protein

Coordinates

chrA06:-:10352536..10353313

Molecular Weight (calculated)

10476.5 Da

IEP (calculated)

9.364

GRAVY (calculated)

-0.568

Length

93 amino acids

Sequence
(BLAST)

1: MSSRRSRSSR QTGTSMISED QINDLVLQLH RLLPELGNNN RRSGKVSASK VLQETCTYIR NLNKEVDDLS ERLSQLLEST DSAQAALIRS LLM

Best Arabidopsis Sequence Match ( AT3G47710.1 )
(BLAST)

1: MSSRKSRSRQ TGASMITDEQ INDLVLQLHR LLPELANNRR SGKVSASRVL QETCSYIRNL SKEVDDLSER LSQLLESTDS AQAALIRSLL MQ

Arabidopsis Description

PRE4Transcription factor PRE4 [Source:UniProtKB/Swiss-Prot;Acc:F4JCN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.