Factsheet for Bra028443.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004740.1-P
Bra024474.1-P
Bra037226.1-P
Bra037738.1-P
Bra039618.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39860.1	Bra024474.1-P	AT2G18300.3	23221598
AT5G39860.1	Bra037226.1-P	AT2G18300.3	23221598
AT5G39860.1	Bra039618.1-P	AT2G18300.3	23221598
AT5G39860.1	Bra004740.1-P	AT2G43060.1	20009022
AT5G39860.1	Bra037738.1-P	AT2G43060.1	20009022

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65320	Canola	mitochondrion	98.91	98.91
CDX67440	Canola	mitochondrion	98.91	98.91
AT5G39860.1	Thale cress	mitochondrion	92.39	92.39
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	82.61	82.61
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	81.52	81.52
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	73.91	75.56
KRH18488	Soybean	mitochondrion	73.91	74.73
KRG93518	Soybean	mitochondrion	73.91	74.73
Solyc02g087860.2.1	Tomato	nucleus	73.91	73.91
PGSC0003DMT400003587	Potato	nucleus	73.91	73.91
PGSC0003DMT400017748	Potato	nucleus	71.74	70.97
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	70.65	70.65
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	70.65	70.65
Bra016299.1-P	Field mustard	nucleus	71.74	70.21
Solyc02g067380.2.1	Tomato	nucleus	71.74	70.21
Bra008716.1-P	Field mustard	mitochondrion, plastid	71.74	70.21
Bra023508.1-P	Field mustard	mitochondrion	70.65	69.89
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.65	69.15
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	67.39	68.89
Bra018117.1-P	Field mustard	nucleus	69.57	68.82
Bra012435.1-P	Field mustard	nucleus	69.57	68.09
Bra024672.1-P	Field mustard	nucleus	68.48	66.32
PGSC0003DMT400008752	Potato	plastid	68.48	65.62
Bra008154.1-P	Field mustard	nucleus	65.22	64.52
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.13	63.44

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra028443	EnsemblPlants:Bra028443.1	EnsemblPlants:Bra028443.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009640	GO:GO:0009653	GO:GO:0009719	GO:GO:0009741	GO:GO:0009791	GO:GO:0009826
GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	GO:GO:0046983	GO:GO:0048510
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4EI28	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	SUPFAM:SSF47459	UniParc:UPI00025432AD	InterPro:bHLH_dom	:

Description

AT5G39860 (E=4e-042) PRE1 | PRE1 (PACLOBUTRAZOL RESISTANCE1); DNA binding / transcription factor

Coordinates

chrA02:+:354896..355832

Molecular Weight (calculated)

10524.5 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.627

Length

92 amino acids

Sequence
(BLAST)

1: MSNRRSRQSS SAPRISDDQI IDLVTKLREI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN REVDNLSERL AQLLESVDED SPQAAVIRSL LM

Best Arabidopsis Sequence Match ( AT5G39860.1 )
(BLAST)

1: MSNRRSRQSS SAPRISDNQM IDLVSKLRQI LPEIGQRRRS DKASASKVLQ ETCNYIRNLN REVDNLSERL SQLLESVDED SPEAAVIRSL LM

Arabidopsis Description

PRE1Transcription factor PRE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLE9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.