Factsheet for Bra025358.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
AT3G28857.1	Thale cress	mitochondrion	90.22	90.22
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	89.13	89.13
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	82.61	82.61
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	76.09	77.78
KRH18488	Soybean	mitochondrion	76.09	76.92
KRG93518	Soybean	mitochondrion	76.09	76.92
Solyc02g087860.2.1	Tomato	nucleus	73.91	73.91
PGSC0003DMT400003587	Potato	nucleus	73.91	73.91
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
PGSC0003DMT400017748	Potato	nucleus	73.91	73.12
Solyc02g067380.2.1	Tomato	nucleus	73.91	72.34
Bra016299.1-P	Field mustard	nucleus	72.83	71.28
Bra012435.1-P	Field mustard	nucleus	70.65	69.15
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	66.3	67.78
Bra023508.1-P	Field mustard	mitochondrion	68.48	67.74
PGSC0003DMT400008752	Potato	plastid	70.65	67.71
Bra024672.1-P	Field mustard	nucleus	69.57	67.37
Bra008716.1-P	Field mustard	mitochondrion, plastid	67.39	65.96
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	66.3	64.89
Bra008154.1-P	Field mustard	nucleus	65.22	64.52
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.04	62.37
Bra018117.1-P	Field mustard	nucleus	61.96	61.29

Protein Annotations

EnsemblPlants:Bra025358.1	EnsemblPlants:Bra025358.1-P	EnsemblPlantsGene:Bra025358	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	PFAM:PF00010	PFscan:PS50888	SEG:seg	SUPFAM:SSF47459
UniParc:UPI000253FB53	UniProt:M4E9A2	MapMan:15.5.32	:	:	:

Description

AT3G28857 (E=5e-032) | transcription regulator

Coordinates

chrA06:+:22016958..22017509

Molecular Weight (calculated)

10716.8 Da

IEP (calculated)

9.332

GRAVY (calculated)

-0.674

Length

92 amino acids

Sequence
(BLAST)

1: MSNRRSRQSS SATRISDDQI IDLVSKLRQF LPEIRERRRS DKVSASKVLQ ETCNYIRKLH REVDNISDRL SLLLDSVDED SQEAAVIRNL LM

Best Arabidopsis Sequence Match ( AT3G28857.1 )
(BLAST)

1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM

Arabidopsis Description

PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.