Factsheet for Bra008716.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69545	Canola	mitochondrion, plastid	100.0	100.0
CDX85055	Canola	mitochondrion, plastid	98.94	98.94
Bra023508.1-P	Field mustard	mitochondrion	97.87	98.92
AT5G15160.1	Thale cress	mitochondrion	94.68	94.68
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	94.68	94.68
KRH45881	Soybean	mitochondrion	71.28	72.04
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.21	71.74
Bra024672.1-P	Field mustard	nucleus	71.28	70.53
Bra016299.1-P	Field mustard	nucleus	70.21	70.21
KRG99125	Soybean	cytosol, mitochondrion, nucleus	69.15	69.89
Bra012435.1-P	Field mustard	nucleus	69.15	69.15
KRH69304	Soybean	mitochondrion	68.09	68.82
KRH74825	Soybean	mitochondrion	67.02	67.74
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	65.96	67.39
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	65.96	67.39
Bra018117.1-P	Field mustard	nucleus	65.96	66.67
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	62.77	65.56
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.7	62.37
Bra008154.1-P	Field mustard	nucleus	58.51	59.14

Protein Annotations

EnsemblPlants:Bra008716.1	EnsemblPlants:Bra008716.1-P	EnsemblPlantsGene:Bra008716	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	PFAM:PF00010	PFscan:PS50888	SEG:seg
SUPFAM:SSF47459	UniParc:UPI0002544FCB	UniProt:M4CWW9	MapMan:15.5.32	:	:

Description

AT5G15160 (E=2e-035) | bHLH family protein

Coordinates

chrA10:+:13526913..13527986

Molecular Weight (calculated)

10605.4 Da

IEP (calculated)

9.362

GRAVY (calculated)

-0.764

Length

94 amino acids

Sequence
(BLAST)

1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SSTVSASKVL QETCNYIRNL NKEADDLSDR LSQLLETIDP NSPQAAIIRS LINE

Best Arabidopsis Sequence Match ( AT5G15160.1 )
(BLAST)

1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SNTVSASKVL QETCNYIRNL NKEADDLSDR LTQLLESIDP NSPQAAVIRS LING

Arabidopsis Description

PRE2Transcription factor PRE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.