Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008716.1-P | Field mustard | mitochondrion, plastid | 98.94 | 98.94 |
| CDX69545 | Canola | mitochondrion, plastid | 98.94 | 98.94 |
| CDX85562 | Canola | mitochondrion | 96.81 | 97.85 |
| CDY68961 | Canola | mitochondrion | 95.74 | 96.77 |
| CDX91006 | Canola | mitochondrion | 95.74 | 96.77 |
| CDX78615 | Canola | mitochondrion | 94.68 | 94.68 |
| AT5G15160.1 | Thale cress | mitochondrion | 93.62 | 93.62 |
| CDX67440 | Canola | mitochondrion | 70.21 | 71.74 |
| CDY65320 | Canola | mitochondrion | 70.21 | 71.74 |
| KRH45881 | Soybean | mitochondrion | 70.21 | 70.97 |
| CDY16207 | Canola | nucleus | 70.21 | 69.47 |
| CDY46428 | Canola | nucleus | 69.15 | 69.15 |
| KRG99125 | Soybean | cytosol, mitochondrion, nucleus | 68.09 | 68.82 |
| CDY40269 | Canola | nucleus | 68.09 | 68.09 |
| KRH69304 | Soybean | mitochondrion | 67.02 | 67.74 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.96 | 67.39 |
| CDY28427 | Canola | nucleus | 67.02 | 67.02 |
| KRH74825 | Soybean | mitochondrion | 65.96 | 66.67 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.89 | 66.3 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.89 | 66.3 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.89 | 66.3 |
| CDY36934 | Canola | nucleus | 64.89 | 65.59 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.83 | 65.22 |
| CDY24160 | Canola | nucleus | 63.83 | 64.52 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.7 | 64.44 |
| CDY63469 | Canola | nucleus | 62.77 | 63.44 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 60.64 | 63.33 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.7 | 62.37 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.7 | 62.37 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 61.7 | 62.37 |
| CDY69564 | Canola | cytosol, nucleus | 54.26 | 57.95 |
Protein Annotations
| EnsemblPlants:CDX85055 | EnsemblPlantsGene:GSBRNA2T00142499001 | Gene3D:4.10.280.10 | GO:A0A078D7H9 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX85055 |
| ProteinID:CDX85055.1 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EC2D50 | MapMan:15.5.32 | : |
Description
BnaC05g20000D
Coordinates
chrLK031839:-:1782158..1783503
Molecular Weight (calculated)
10604.4 Da
IEP (calculated)
10.107
GRAVY (calculated)
-0.764
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SSTVSASKVL QETCNYIRNL NKEANDLSDR LSQLLETIDP NSPQAAIIRS LINE
1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SNTVSASKVL QETCNYIRNL NKEADDLSDR LTQLLESIDP NSPQAAVIRS LING
Arabidopsis Description
PRE2Transcription factor PRE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.