Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033063.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 98.91 | 98.91 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 98.91 | 98.91 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 93.48 | 93.48 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 92.39 | 92.39 |
| AT3G28857.1 | Thale cress | mitochondrion | 89.13 | 89.13 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 88.04 | 88.04 |
| CDY63469 | Canola | nucleus | 88.04 | 87.1 |
| CDX67440 | Canola | mitochondrion | 81.52 | 81.52 |
| CDY65320 | Canola | mitochondrion | 81.52 | 81.52 |
| VIT_14s0108g00420.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 76.09 | 77.78 |
| KRH18488 | Soybean | mitochondrion | 75.0 | 75.82 |
| KRG93518 | Soybean | mitochondrion | 75.0 | 75.82 |
| PGSC0003DMT400003587 | Potato | nucleus | 75.0 | 75.0 |
| Solyc02g087860.2.1 | Tomato | nucleus | 75.0 | 75.0 |
| PGSC0003DMT400017748 | Potato | nucleus | 75.0 | 74.19 |
| KRH40108 | Soybean | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| KRH01162 | Soybean | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| Solyc02g067380.2.1 | Tomato | nucleus | 75.0 | 73.4 |
| CDY46428 | Canola | nucleus | 71.74 | 70.21 |
| CDY40269 | Canola | nucleus | 69.57 | 68.09 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.3 | 67.78 |
| CDX91006 | Canola | mitochondrion | 68.48 | 67.74 |
| CDY16207 | Canola | nucleus | 69.57 | 67.37 |
| CDY28427 | Canola | nucleus | 68.48 | 67.02 |
| CDX85562 | Canola | mitochondrion | 67.39 | 66.67 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.22 | 66.67 |
| PGSC0003DMT400008752 | Potato | plastid | 68.48 | 65.62 |
| CDY68961 | Canola | mitochondrion | 66.3 | 65.59 |
| CDX69545 | Canola | mitochondrion, plastid | 66.3 | 64.89 |
| CDX78615 | Canola | mitochondrion | 65.22 | 63.83 |
| CDX85055 | Canola | mitochondrion, plastid | 65.22 | 63.83 |
| CDY69564 | Canola | cytosol, nucleus | 60.87 | 63.64 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.13 | 63.44 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.13 | 63.44 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.13 | 63.44 |
| CDY24160 | Canola | nucleus | 63.04 | 62.37 |
| CDY36934 | Canola | nucleus | 61.96 | 61.29 |
Protein Annotations
| EnsemblPlants:CDY04040 | EnsemblPlantsGene:GSBRNA2T00117629001 | Gene3D:4.10.280.10 | GO:A0A078EQ13 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | PFscan:PS50888 | ProteinID:CDY04040 | ProteinID:CDY04040.1 |
| SUPFAM:SSF47459 | UniParc:UPI0004EB22EC | MapMan:15.5.32 | : | : | : |
Description
BnaC02g37550D
Coordinates
chrLK031948:-:683145..683673
Molecular Weight (calculated)
10665.7 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.617
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSNRRSRQSS SALRISDDQM IDLVSKLCQL LPEIRERRRS DKVSASKVLH ETCNYIRKLH REVDNLSDRL SQLLDAVDED SHEASVIRSL LM
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
Arabidopsis Description
PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.