Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023508.1-P | Field mustard | mitochondrion | 98.92 | 98.92 |
| CDX85562 | Canola | mitochondrion | 98.92 | 98.92 |
| CDX91006 | Canola | mitochondrion | 97.85 | 97.85 |
| CDX69545 | Canola | mitochondrion, plastid | 97.85 | 96.81 |
| CDX85055 | Canola | mitochondrion, plastid | 96.77 | 95.74 |
| CDX78615 | Canola | mitochondrion | 93.55 | 92.55 |
| AT5G15160.1 | Thale cress | mitochondrion | 92.47 | 91.49 |
| KRH45881 | Soybean | mitochondrion | 72.04 | 72.04 |
| CDY65320 | Canola | mitochondrion | 69.89 | 70.65 |
| CDX67440 | Canola | mitochondrion | 69.89 | 70.65 |
| CDY16207 | Canola | nucleus | 72.04 | 70.53 |
| CDY46428 | Canola | nucleus | 70.97 | 70.21 |
| KRG99125 | Soybean | cytosol, mitochondrion, nucleus | 69.89 | 69.89 |
| CDY40269 | Canola | nucleus | 69.89 | 69.15 |
| KRH69304 | Soybean | mitochondrion | 68.82 | 68.82 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 67.74 | 68.48 |
| CDY28427 | Canola | nucleus | 68.82 | 68.09 |
| KRH74825 | Soybean | mitochondrion | 67.74 | 67.74 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.67 | 67.39 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.67 | 67.39 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 66.67 | 67.39 |
| CDX96550 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 66.67 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 65.59 | 66.3 |
| CDX73095 | Canola | cytosol, mitochondrion, nucleus, plastid | 63.44 | 65.56 |
| CDY36934 | Canola | nucleus | 64.52 | 64.52 |
| CDY63469 | Canola | nucleus | 64.52 | 64.52 |
| CDX85841 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 64.52 |
| CDX85840 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 64.52 |
| CDX68180 | Canola | cytosol, mitochondrion, nucleus, plastid | 64.52 | 64.52 |
| CDY24160 | Canola | nucleus | 63.44 | 63.44 |
| CDY69564 | Canola | cytosol, nucleus | 56.99 | 60.23 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078JTJ5 | UniProt:A0A078JTJ5 | EnsemblPlants:CDY68961 | ProteinID:CDY68961 |
| ProteinID:CDY68961.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00081492001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | SUPFAM:SSF47459 | UniParc:UPI0004EE14C7 | InterPro:bHLH_dom | SEG:seg |
Description
BnaCnng61200DBnaCnng61200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTJ5]
Coordinates
chrLK038352:-:1030..2306
Molecular Weight (calculated)
10568.4 Da
IEP (calculated)
9.363
GRAVY (calculated)
-0.789
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRQAS SSSRISDDQI TDLISKLRQS IPEIRQNRRS STVSASKVLQ ETCNYIRNLH KEADDLSDRL SQLLETIDPN NPQAAIIRSL INE
1: MSSSRRSRQA SSSSRISDDQ ITDLISKLRQ SIPEIRQNRR SNTVSASKVL QETCNYIRNL NKEADDLSDR LTQLLESIDP NSPQAAVIRS LING
Arabidopsis Description
PRE2Transcription factor PRE2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.